Commits for tdreszer
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v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247
- Support for extraFields trackDb setting for bed items
- Merge branch 'master' of tdreszer@hgwdev.cse.ucsc.edu:/data/git/kent
- Added extraFields for bed hgc support
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
- Added extraFields for hgc
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 1, context: html, text, full: html, text
- mdb queries need to be case-sensitive for mdb objs
- Adding Open Chrom Synthesis tracks schema which is a bed 9 +.
- src/hg/lib/encode/openChromCombinedPeaks.sql - lines changed 28, context: html, text, full: html, text
- Fixed long labels to match the new and unloved std
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 296, context: html, text, full: html, text
- Change the link to track settings to Katrina's suggested text.
- src/hg/hgFileUi/hgFileUi.c - lines changed 3, context: html, text, full: html, text
- Added routine to get an slName list of settings from tdb tree which wildMatch an expression
- src/hg/lib/trackDbCustom.c - lines changed 52, context: html, text, full: html, text
- Fixed hgc downloads link bug reported in redmine 1550.7. Also refactored code in preparation for adding filters for bed n + extra fields. That code is still ifdef'd out.
- Added 'Alignments' to display conventions at Katrina's request.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html - lines changed 2, context: html, text, full: html, text
- Added 'Raw Data' into the display conventions so that each 'view' is covered and the information is readily available on hgFileUi downloads page.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html - lines changed 5, context: html, text, full: html, text
- Broad should not declare origAssembly=hg18 in trackDb as all were remapped on hg19, not lifted over. origAssembly=hg18 still belongs in the mdb
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 288, context: html, text, full: html, text
- Accidentally checked in with test code ifdef'd in. Now out.
- Fixed long labels to get this by the QA watchdogs and removed the display only views from Display Conventions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 136, context: html, text, full: html, text
- Added wildCardHash() routine to support tagTypes like *FilterLimits.
- src/hg/utils/tdbQuery/tdbQuery.c - lines changed 81, context: html, text, full: html, text
- Added 3 wildcard based tags. '*Filter' cound be pValueFilter or scoreFilter or...
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 3, context: html, text, full: html, text
- Added pValueFilter and filterBy ocCode for extra coolness.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 5, context: html, text, full: html, text
- Added support for '*Filter' generic score filter logic to beds
- src/hg/hgTracks/simpleTracks.c - lines changed 4, context: html, text, full: html, text
- Merge branch 'master' of tdreszer@hgwdev.cse.ucsc.edu:/data/git/kent
- Again the newline at the end of the file vanished. What is git up to...
- src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text
- Removing referenced javascript files from popup dialog. However, there are still problems, because the javascript is needed but getScript hoses jQuery memory some how.
- Small change to sort column hover over header, but this does not fix IE problem with hover CSS. Should chnage our CGI HTML page doctype to strict.
- src/hg/htdocs/style/HGStyle.css - lines changed 2, context: html, text, full: html, text
- We should upgrade to doctyype 4.01 strict from 3.2. It does fix atleast one IE problem. But that will require a lot of testing.
- More wrangling details
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 35, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt - lines changed 24, context: html, text, full: html, text
- Standardized longLabels and fixed defaults that Terry Furey noticed.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra - lines changed 119, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra - lines changed 141, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 79, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra - lines changed 7, context: html, text, full: html, text
- Fixed redmine track #98, question #56: bug in filterComposite when 'All' is selected.
- Like the link to supertrack parent, added a link to the top level track list
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 11, context: html, text, full: html, text
- Refinements of link to full track list as suggested by QA
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 12, context: html, text, full: html, text
- Merge branch 'master' of tdreszer@hgwdev.cse.ucsc.edu:/data/git/kent
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