dcbab44d5c271bfcb172df5788768ab3ec74b79e donnak Tue Mar 1 11:38:40 2011 -0800 Added italics. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index b1cec01..f440596 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,111 +1,111 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <FONT SIZE="4"><A NAME="TOC"></A><B> News</B></FONT></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <P> <FONT FACE="courier" SIZE="3"><B>1 March 2011 - Updated Chimpanzee Browser Released</B></FONT> <P> We are happy to announce the release of a Genome Browser for - the latest release of the chimpanzee (Pan troglodytes) - genome. The Oct. 2010 assembly -- CGSC v2.1.3, - UCSC version panTro3 -- was produced by the + the latest release of the chimpanzee (<em>Pan + troglodytes</em>) genome. The Oct. 2010 assembly -- CGSC + v2.1.3, UCSC version panTro3 -- was produced by the <A HREF="http://genome.wustl.edu/genome.cgi?GENOME=Pan%20troglodytes&SECTION=collaborators" TARGET=_BLANK>Chimpanzee Sequencing and Analysis Consortium</A>.</P> <P> This assembly covers about 97 percent of the genome and is based on 6X sequence coverage. It comprises 192,898 contigs with an N50 length of 44 kb and 33,990 supercontigs with an N50 length of 8.4 Mb. Improvements introduced with the 2.1.3 assembly include the addition of over 300,000 finishing reads and the merging in of 640 finished BACS. Approximately 49,000 additional merges were made in this assembly as compared with the 2.1 assembly. <P> The whole genome shotgun data were derived primarily from the donor Clint, a captive-born male chimpanzee from the Yerkes Primate Research Center in Atlanta, GA, USA. The sequence data were assembled and organized by the Washington University Genome Center. The underlying whole genome shotgun data were generated at the Washington University School of Medicine and the Broad Institute. For detailed information about the assembly process, see the sequencing and analysis discussion in the <A HREF="http://www.ncbi.nlm.nih.gov/nuccore/AACZ00000000" TARGET=_blank>GenBank accession record</A>. </P> <P> Bulk downloads of the sequence and annotation data are available via the Genome Browser <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/panTro3/">FTP server</A> or the <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#chimp">Downloads</A> page. The complete set of sequence reads is available at the <A HREF="http://www.ncbi.nlm.nih.gov/Traces" TARGET=_blank>NCBI trace archive</A>. These data have <A HREF="goldenPath/credits.html#chimp_use">specific conditions for use</A>.</P> <P> We'd like to thank the International Chimpanzee Sequencing and Analysis Consortium, Washington University at St. Louis School of Medicine Genome Sequencing Center, and the Broad Institute for providing this assembly. We'd also like to acknowledge the UCSC team who worked on this release: Hiram Clawson, Greg Roe, and Donna Karolchik. The chimpanzee browser annotation tracks were generated by UCSC and collaborators worldwide. </P> <P> <HR> <FONT FACE="courier" SIZE="3"><B>19 January 2011 - Browser Released for Zebrafish Zv9 Assembly: </B></FONT> The most recent zebrafish assembly -- Zv9 (UCSC version danRer7, Jul. 2010) -- is now available in the UCSC Genome Browser. <A HREF="goldenPath/newsarch.html#011911">Read more</A>. <P> <FONT FACE="courier" SIZE="3"><B>10 January 2011 - Introducing Genome Browser Right-click Navigation: </B></FONT> Several of the common display and navigation operations offered on the Genome Browser tracks page may now be quickly accessed by right-clicking on a feature on the tracks image and selecting an option from the displayed menu. <A HREF="goldenPath/newsarch.html#011011">Read more</A>. <P> <FONT FACE="courier" SIZE="3"><B>2 December 2010 - Searching for Tracks Just Got Easier! </B></FONT> With our latest Genome Browser release, we've introduced a new track search feature that will help you to quickly and easily find and display specific annotation data sets. The search feature is available via the "track search" button on the browser gateway and tracks display pages. <A HREF="goldenPath/newsarch.html#120210">Read more</A>. </P> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>