File Changes for angie

v247_base to v248_preview (2011-02-14 to 2011-02-22) v248

• src/hg/hgTables/bam.c
  • lines changed 15, context: html, text, full: html, text
    Fixing bug found while playing w/hgTables for Code Review #2840(not caused by Brian's changes): BAM tracks can have separate BAM files per chromosome, in which case the db table has an extra column seqName, so bigWigFileName() won't return the correct fileName for those tracks. Share bigWigFileName's logic for detecting custom track or hub track, and use bamFile.h's bamFileNameFromTable() for database tables.
• src/hg/hgTables/bigWig.c
  • lines changed 12, context: html, text, full: html, text
    Fixing bug found while playing w/hgTables for Code Review #2840(not caused by Brian's changes): BAM tracks can have separate BAM files per chromosome, in which case the db table has an extra column seqName, so bigWigFileName() won't return the correct fileName for those tracks. Share bigWigFileName's logic for detecting custom track or hub track, and use bamFile.h's bamFileNameFromTable() for database tables.
• src/hg/hgTables/hgTables.h
  • lines changed 8, context: html, text, full: html, text
    Fixing bug found while playing w/hgTables for Code Review #2840(not caused by Brian's changes): BAM tracks can have separate BAM files per chromosome, in which case the db table has an extra column seqName, so bigWigFileName() won't return the correct fileName for those tracks. Share bigWigFileName's logic for detecting custom track or hub track, and use bamFile.h's bamFileNameFromTable() for database tables.
• src/hg/inc/bamFile.h
  • lines changed 2, context: html, text, full: html, text
    Tweaked comment describing bamFileNameFromTable().
• src/hg/lib/bamFile.c
  • lines changed 2, context: html, text, full: html, text
    Tweaked comment describing bamFileNameFromTable().