508483858c31f75ef527d75de66c0aadf0be8574
mmaddren
  Thu Feb 17 15:45:29 2011 -0800
updated rafile and first pass on raInspect
diff --git python/ucscgenomics/rafile/radict.py python/ucscgenomics/rafile/radict.py
deleted file mode 100644
index d75fdba..0000000
--- python/ucscgenomics/rafile/radict.py
+++ /dev/null
@@ -1,73 +0,0 @@
-#
-# rafile/radict.py
-#
-# Holds raDict class which is an internal representation of
-# the data held in the RA file. Essentially just a dict that
-# also has a list to preserve the computationally arbitrary
-# order we want an RA entry to be in.
-#
-
-import sys
-
-class _OrderedDict:
-
-    def __init__(self):
-        self._dictionary = dict()
-        self._ordering = list()
-
-    def add(self, key, value):
-        key = key.strip()
-
-        if (key in self._dictionary):
-            print 'ERROR: RaDict.add() - Key <' + key + '> already exists'
-            sys.exit(1)
-
-        if (key == None or key == ''):
-            return
-        
-        self._dictionary[key] = value
-        self._ordering.append(key)
-        
-    def remove(self, key):
-        key = key.strip()
-
-        if (key not in self._dictionary):
-            print 'ERROR: RaDict.remove() - Key <' + key + '> does not exist'
-            sys.exit(1)
-
-        if (key == None or key == ''):
-            return
-
-        del self._dictionary[key]
-        self._ordering.remove(key)
-
-    def getValue(self, key):
-        if (key not in self._dictionary):
-            print 'ERROR: RaDict.getValue() - KEY <' + key + '> does not exist'
-            sys.exit(1) 
-
-        return self._dictionary[key]
-
-class RaDict(_OrderedDict):
-
-    def addComment(self, comment):
-        if not comment.startswith('#'):
-            print 'ERROR: RaDict.addComment() - <' + comment + '> is not a comment'
-            sys.exit(1)
-
-        self._ordering.append(comment)
-
-    def __str__(self):
-        for key in self._ordering:
-            if key.startswith('#'):
-                print key
-            else:
-                print self._dictionary[key]
-        return ''
-
-class EntryDict(_OrderedDict):
-
-    def __str__(self):
-        for key in self._ordering:
-            print key + ' ' + self._dictionary[key]
-        return ''