Commits for vsmalladi

v247_base to v248_preview (2011-02-14 to 2011-02-22) v248

• Upgraded to using the new hgFileUi cgi. As a result filled in missing treatment values in metaDb. Also, added new html page to remove refrences to downloads page, as track description in now present on hgFileUi page.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 571, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html - lines changed 113, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 3, context: html, text, full: html, text
• Upgraded Downloads page to use new hgFileUi and fileSortOrder.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 1, context: html, text, full: html, text
• Removed the implied dataVersion in trackDb. Also set Hotspots and Peaks to dense as requested by the lab.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 7, context: html, text, full: html, text
• Added back missing AoAf Replicate 1 data.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 29, context: html, text, full: html, text
• Removed dataVersion, as this is out of date. Added treatment to sortOrder and renamed subgroup for HUVEC so that it is pairing with other HUVEC cells.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 3, context: html, text, full: html, text
• Updated display of Hotspots and peaks from pack to dense.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 4, context: html, text, full: html, text
• Removed the following sentence 'Data have been normalized to 25 million reads per cell type.' on instructions from lab. The data has not been normalized.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html - lines changed 1, context: html, text, full: html, text
• Removed dataVersion, as this is out of date. Added new html reference. Moved cell lines display from horizontal to vertical.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 3, context: html, text, full: html, text
• Removed the following sentence 'Data have been normalized to 25 million reads per cell type.' on instructions from lab. The data has not been normalized.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.html - lines changed 147, context: html, text, full: html, text
• Removed antibody Input from control to be consistent with use of antibody control across all experiments. Also removed duplicate files and metadata for 2 fastq's: wgEncodeHaibTfbsGm12878InputPcr1xRawDataRep1 and wgEncodeHaibTfbsGm12878InputPcr1xRawDataRep2.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 59, context: html, text, full: html, text
• Updated the display of the wgEncodeSydhTfbsGm12878Xrcc4IggmusSig to be WHIP as it should be and not Xrcc4.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
• Fixed typo of dateReubmitted -> dateResubmitted.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 2, context: html, text, full: html, text
• Added missing experiment GM12878 YY1 to display.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 183, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 40, context: html, text, full: html, text