f56903393fa2ff726fab62f97fe8cd10b302fdff
angie
  Fri Feb 25 11:26:56 2011 -0800
Feature #2820 (tabix: add as optional linked library in kent/src):Wow, adding an external lib dependency to linefile exposed the fact
that many makefiles did not include ${L} properly.

diff --git src/cdnaAli/pairClo/makefile src/cdnaAli/pairClo/makefile
index 2552af9..0620382 100755
--- src/cdnaAli/pairClo/makefile
+++ src/cdnaAli/pairClo/makefile
@@ -1,10 +1,10 @@
 include ../../inc/common.mk
 
 
 O =  pairClo.o 
 
 ${BINDIR}/pairClo: $(O)  
-	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/pairClo $O ../../lib/$(MACHTYPE)/jkweb.a
+	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/pairClo $O ../../lib/$(MACHTYPE)/jkweb.a ${L}
 
 clean::
 	rm -f ${O}