16439684a0ecc75ede242ded740c51cf1f60c8a4 angie Tue Feb 22 11:36:43 2011 -0800 Feature #2820 (tabix: add as optional linked library in kent/src):Added lineFile wrapper on tabix: lineFileOnTabix to open; then lineFileNext and its derivatives work as usual. lineFileSetTabixRegion seeks to the given position range, and subsequent lineFileNext's return lines in that position range. lineFileSeek is not supported -- tabix doesn't have linear offsets but rather a block number and offset which are packed into 64 bits. Line numbers are not known after calls to lineFileSetTabixRegion. diff --git src/lib/makefile src/lib/makefile index e20160c..29e0550 100644 --- src/lib/makefile +++ src/lib/makefile @@ -11,31 +11,31 @@ emblParse.o errCatch.o errabort.o \ fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o \ font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o \ font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o \ font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o \ font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o \ font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o \ font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o \ font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o \ font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o \ fuzzyShow.o \ gapCalc.o gdf.o gemfont.o genomeRangeTree.o \ gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o \ hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o \ https.o intExp.o intValTree.o internet.o itsa.o \ - jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o \ + jointalign.o jpegSize.o keys.o knetUdc.o kxTok.o linefile.o localmem.o log.o \ maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o metaWig.o mgCircle.o \ mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o \ obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o peakCluster.o \ phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o \ psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o \ qa.o quickHeap.o quotedP.o \ ra.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o \ scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o \ servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o \ snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o \ splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o \ tabRow.o textOut.o tokenizer.o trix.o twoBit.o \ udc.o vGfx.o vPng.o verbose.o \ wildcmp.o wormdna.o \ xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o