f56903393fa2ff726fab62f97fe8cd10b302fdff
angie
  Fri Feb 25 11:26:56 2011 -0800
Feature #2820 (tabix: add as optional linked library in kent/src):Wow, adding an external lib dependency to linefile exposed the fact
that many makefiles did not include ${L} properly.

diff --git src/hg/affyGnf/makefile src/hg/affyGnf/makefile
index 4f21d2e..4d13d49 100644
--- src/hg/affyGnf/makefile
+++ src/hg/affyGnf/makefile
@@ -1,22 +1,22 @@
 
 include ../../inc/common.mk
 
 L += $(MYSQLLIBS) -lm 
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 % : %.c
-	$(CC) $(COPT) -I../inc  -I../../inc  -o $@ $(addsuffix .c,$@) $(MYLIBS) $(MYSQLLIBS) -lm -lz
+	$(CC) $(COPT) -I../inc  -I../../inc  -o $@ $(addsuffix .c,$@) $(MYLIBS) ${L} $(MYSQLLIBS) -lm -lz
 	cp $@ ${BINDIR}
 
 O = affyUclaMergePslData affyPslAndAtlasToBed pslAffySelect
 
 
 exe: $(O)
 
 lib:
 	cd ../../lib && ${MAKE}
 
 clean::
 	rm -f affyPslAndAtlasToBed affyUclaMergePslData