f56903393fa2ff726fab62f97fe8cd10b302fdff
angie
  Fri Feb 25 11:26:56 2011 -0800
Feature #2820 (tabix: add as optional linked library in kent/src):Wow, adding an external lib dependency to linefile exposed the fact
that many makefiles did not include ${L} properly.

diff --git src/hg/affyTransciptome/makefile src/hg/affyTransciptome/makefile
index b758860..ca77fa2 100644
--- src/hg/affyTransciptome/makefile
+++ src/hg/affyTransciptome/makefile
@@ -1,16 +1,16 @@
 include ../../inc/common.mk
 
 L += -lz -lm $(MYSQLLIBS)
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a $(L)
 
 O = affyPairsToSample normalizeSampleFile avgTranscriptomeExps maxTranscriptomeExps scaleSampleFiles averageZoomLevels \
 	groupSamples
 
 %: %.c 
-	${CC} ${COPT} ${CFLAGS} -Wimplicit  -I../inc -I../../inc  -o ${BINDIR}/$@ $(addsuffix .c,$@) $(MYLIBS)
+	${CC} ${COPT} ${CFLAGS} -Wimplicit  -I../inc -I../../inc  -o ${BINDIR}/$@ $(addsuffix .c,$@) $(MYLIBS) ${L}
 
 all : $(O)
 
 clean::
 	rm -f ${O}