f56903393fa2ff726fab62f97fe8cd10b302fdff
angie
  Fri Feb 25 11:26:56 2011 -0800
Feature #2820 (tabix: add as optional linked library in kent/src):Wow, adding an external lib dependency to linefile exposed the fact
that many makefiles did not include ${L} properly.

diff --git src/utils/scaffoldFaToAgp/makefile src/utils/scaffoldFaToAgp/makefile
index 1a7b249..fd4454b 100755
--- src/utils/scaffoldFaToAgp/makefile
+++ src/utils/scaffoldFaToAgp/makefile
@@ -1,20 +1,20 @@
 include ../../inc/common.mk
 
 L += 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 INSTALLDIR = ${BINDIR}
 
 PROG = scaffoldFaToAgp
 
 O = ${PROG}.o 
 
 ${PROG}: ${O}
-	${CC} ${COPT} ${CFLAGS} -o ${INSTALLDIR}/${PROG} $O ${MYLIBS}
+	${CC} ${COPT} ${CFLAGS} -o ${INSTALLDIR}/${PROG} $O ${MYLIBS} ${L}
 
 test: ${INSTALLDIR}/${PROG}
 	cd test && csh runtest
 
 clean: 
 	rm -f ${O}