File Changes for hiram

v248_preview to v248_preview2 (2011-02-22 to 2011-03-01) v248

• src/hg/inc/hdb.h
  • lines changed 7, context: html, text, full: html, text
    per Mark's advice, move html printout from hdb to hui
• src/hg/inc/hui.h
  • lines changed 8, context: html, text, full: html, text
    per Mark's advice, move html printout from hdb to hui
• src/hg/lib/hdb.c
  • lines changed 59, context: html, text, full: html, text
    per Mark's advice, move html printout from hdb to hui
• src/hg/lib/hui.c
  • lines changed 59, context: html, text, full: html, text
    per Mark's advice, move html printout from hdb to hui
• src/hg/makeDb/doc/calJac3.txt
  • lines changed 1, context: html, text, full: html, text
    construct download files for panTro3 and running cpgIsland
• src/hg/makeDb/doc/hg19.txt
  • lines changed 59, context: html, text, full: html, text
    running panTro3 lastz
  • lines changed 7, context: html, text, full: html, text
    continuing lastz run on panTro3
  • lines changed 10, context: html, text, full: html, text
    finished with hg19 panTro3 lastz
  • lines changed 64, context: html, text, full: html, text
    resolve merge conflict
  • lines changed 2, context: html, text, full: html, text
    remove temporary comment
• src/hg/makeDb/doc/panTro2.txt
  • lines changed 13, context: html, text, full: html, text
    have rn blat liftOver panTro2 to panTro3
• src/hg/makeDb/doc/panTro3.txt
  • lines changed 64, context: html, text, full: html, text
    done with RM and TRF repeats
  • lines changed 37, context: html, text, full: html, text
    ctgPos2 done and all 'other' gaps are marked
  • lines changed 261, context: html, text, full: html, text
    blat server setup, genbank running lastz with calJac3 and rheMac2 running
  • lines changed 48, context: html, text, full: html, text
    running lastz rn4
  • lines changed 352, context: html, text, full: html, text
    lastz running for mm9 ponAbe2 rheMac2 calJac3 equCab2 canFam2 monDom5 galGal3
  • lines changed 97, context: html, text, full: html, text
    construct download files for panTro3 and running cpgIsland
  • lines changed 23, context: html, text, full: html, text
    cpgIsland track done
  • lines changed 16, context: html, text, full: html, text
    genbank done
  • lines changed 2, context: html, text, full: html, text
    no perChrom tables needed for genbank
  • lines changed 1, context: html, text, full: html, text
    genbank reloaded
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    adding panTro3 to the daily update cycle
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    adding panTro3
  • lines changed 1, context: html, text, full: html, text
    add panTro3.lift file
  • lines changed 1, context: html, text, full: html, text
    turn off perChromTables for panTro3
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    adding panTro3 to the daily update cycle
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    adding panTro3
  • lines changed 1, context: html, text, full: html, text
    add chain net PanTro3
• src/hg/makeDb/trackDb/chimp/panTro3/ctgPos2.html
  • lines changed 10, context: html, text, full: html, text
    adding ctgPos2 track
• src/hg/makeDb/trackDb/chimp/panTro3/gap.html
  • lines changed 4, context: html, text, full: html, text
    update numbers and types
• src/hg/makeDb/trackDb/chimp/panTro3/gold.html
  • lines changed 4, context: html, text, full: html, text
    update numbers and types
• src/hg/makeDb/trackDb/chimp/panTro3/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding ctgPos2 track
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 50, context: html, text, full: html, text
    adding chain net PanTro3 business
• src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    add matrix to chain and net composites