File Changes for tdreszer

v248_preview to v248_preview2 (2011-02-22 to 2011-03-01) v248

• src/hg/hgApi/hgApi.c
  • lines changed 27, context: html, text, full: html, text
    Another step towards supporting multi-selects in track search and file search
• src/hg/hgFileSearch/hgFileSearch.c
  • lines changed 750, context: html, text, full: html, text
    Working on file search as a stand alone CGI. Not ready yet, but it does work.
  • lines changed 1, context: html, text, full: html, text
    Brooke suggests 'is amung' instead of 'is (any of)'.
  • lines changed 1, context: html, text, full: html, text
    Mdb vars for files, not tables
• src/hg/hgFileSearch/makefile
  • lines changed 15, context: html, text, full: html, text
    Working on file search as a stand alone CGI. Not ready yet, but it does work.
• src/hg/hgTracks/searchTracks.c
  • lines changed 15, context: html, text, full: html, text
    Fixed redmine 2911. 'No tracks found' message was lost but now is found.
  • lines changed 91, context: html, text, full: html, text
    Support for multi-selects for mdb searches on advanced tab. Requires cv.ra change to be active.
  • lines changed 1, context: html, text, full: html, text
    Brooke suggests 'is amung' instead of 'is (any of)'.
• src/hg/inc/mdb.h
  • lines changed 33, context: html, text, full: html, text
    Added mdbObjsEncodeExperimentify() which will organize objects into experiments and allow the expId to be updated into the mdb
• src/hg/js/hgTracks.js
  • lines changed 446, context: html, text, full: html, text
    Moved code from 'hgTracks.js' to common 'utils.js' and added support for multi-selects in file and track search
• src/hg/js/utils.js
  • lines changed 466, context: html, text, full: html, text
    Moved code from 'hgTracks.js' to common 'utils.js' and added support for multi-selects in file and track search
  • lines changed 1, context: html, text, full: html, text
    Brooke suggests 'is amung' instead of 'is (any of)'.
• src/hg/lib/fileUi.c
  • lines changed 15, context: html, text, full: html, text
    File search can get terribly slow with too many files. Limit to 1000.
• src/hg/lib/mdb.c
  • lines changed 789, context: html, text, full: html, text
    Added mdbObjsEncodeExperimentify() which will organize objects into experiments and allow the expId to be updated into the mdb
  • lines changed 2, context: html, text, full: html, text
    Always print composite summary msg in mdbObjsEncodeExperimentify()
  • lines changed 23, context: html, text, full: html, text
    Beginning to support mutiSelects for cv.ra searchables
  • lines changed 1, context: html, text, full: html, text
    Need to change cv.ra white list to include multiSelects.
  • lines changed 16, context: html, text, full: html, text
    Cleaned up a little code to make track search not dependent upon var=tableName being set.
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 16, context: html, text, full: html, text
    Added -encodeExp options to mdbPrint and mdbUpdate allowing organizing objects into experiments and possibly updating the expId
• src/hg/makeDb/mdbUpdate/mdbUpdate.c
  • lines changed 46, context: html, text, full: html, text
    Added -encodeExp options to mdbPrint and mdbUpdate allowing organizing objects into experiments and possibly updating the expId
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 27, context: html, text, full: html, text
    Now that multiSelect is supported in track search and file search, turn in on in cv.
  • lines changed 1, context: html, text, full: html, text
    Changed the comment for submittedDataVersion validation to be more clear (I hope).
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    Kate missed this step - shame
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUmassDekker5C.ra
  • lines changed 137, context: html, text, full: html, text
    Kate wrangles
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
  • lines changed 25, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 56, context: html, text, full: html, text
    Further fine-tuning as per QA
  • lines changed 11, context: html, text, full: html, text
    Removed erroneous text from the methods section
  • lines changed 5, context: html, text, full: html, text
    Oops. Added paragraph back in.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra
  • lines changed 196, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 1, context: html, text, full: html, text
    Minor changes to composite long label to further identify lab
  • lines changed 1, context: html, text, full: html, text
    Further fine-tuning as per QA
  • lines changed 1, context: html, text, full: html, text
    Base Overlap is not 'raw'
  • lines changed 1, context: html, text, full: html, text
    Standardizing tier 1 and 2 labels
  • lines changed 177, context: html, text, full: html, text
    Back to the new style 'Dnesity Signal' and 'Overlap Signal' labelling
  • lines changed 1, context: html, text, full: html, text
    Back and forth 'Density Signal' and 'Overlap Signal' labelling
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html
  • lines changed 24, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 52, context: html, text, full: html, text
    Further fine-tuning as per QA
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.ra
  • lines changed 230, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 1, context: html, text, full: html, text
    Base Overlap is not 'raw'
  • lines changed 219, context: html, text, full: html, text
    Back to the new style 'Dnesity Signal' and 'Overlap Signal' labelling
  • lines changed 1, context: html, text, full: html, text
    Back and forth 'Density Signal' and 'Overlap Signal' labelling
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
  • lines changed 24, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 49, context: html, text, full: html, text
    Further fine-tuning as per QA
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
  • lines changed 126, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 1, context: html, text, full: html, text
    Minor changes to composite long label to further identify lab
  • lines changed 1, context: html, text, full: html, text
    Further fine-tuning as per QA
  • lines changed 1, context: html, text, full: html, text
    Base Overlap is not 'raw'
  • lines changed 128, context: html, text, full: html, text
    Back to the new style 'Dnesity Signal' and 'Overlap Signal' labelling
  • lines changed 1, context: html, text, full: html, text
    Back and forth 'Density Signal' and 'Overlap Signal' labelling
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.html
  • lines changed 53, context: html, text, full: html, text
    Further fine-tuning as per QA
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.ra
  • lines changed 22, context: html, text, full: html, text
    Changed a bunch of labels as per QA and Kate. I have not removed Base Overlap signals and consequently the labels still distinglushe between those signals and f-Seq Density signals. However I have gone back to FD and BO used in the hg18 short labels and have made the longLabels more explicit.
  • lines changed 1, context: html, text, full: html, text
    Further fine-tuning as per QA
  • lines changed 1, context: html, text, full: html, text
    Standardizing tier 1 and 2 labels
  • lines changed 2, context: html, text, full: html, text
    Back to the new style 'Dnesity Signal' and 'Overlap Signal' labelling
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    Go ahead and make the new hgFileSearch cgi