Commits for hiram

v249_preview2 to v249_base (2011-03-22 to 2011-03-29) v249

• correcting some of the later stderr outputs
  • src/hg/utils/automation/gwUploadFile - lines changed 5, context: html, text, full: html, text
• indicate gwUploadFile command to load all this business
  • src/hg/makeDb/doc/29mammals.txt - lines changed 63, context: html, text, full: html, text
• add note reference to genomewiki instructions for this same procedure
  • src/hg/makeDb/doc/29mammals.txt - lines changed 3, context: html, text, full: html, text
• gap annotations on the multiz12way.maf
  • src/hg/makeDb/doc/panTro3.txt - lines changed 45, context: html, text, full: html, text
• adding server port to returnto string for genomewiki login
  • src/hg/lib/wikiLink.c - lines changed 7, context: html, text, full: html, text
  • src/inc/cheapcgi.h - lines changed 3, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 6, context: html, text, full: html, text
• a default of port 80 if it isn't defined
  • src/lib/cheapcgi.c - lines changed 5, context: html, text, full: html, text
• lifting ensGene from panTro2 to panTro3
  • src/hg/makeDb/doc/panTro3.txt - lines changed 82, context: html, text, full: html, text
• maf frames added
  • src/hg/makeDb/doc/panTro3.txt - lines changed 93, context: html, text, full: html, text
• initial contents of 12-way conservation track
  • src/hg/makeDb/trackDb/chimp/panTro3/trackDb.ra - lines changed 156, context: html, text, full: html, text
• 4D predictions made on ensGene
  • src/hg/makeDb/doc/panTro3.txt - lines changed 191, context: html, text, full: html, text