d1315ddd4b44f6cf470237caa5f054dc0e24b798
kent
  Tue Mar 22 15:49:03 2011 -0700
Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
diff --git src/utils/bedGeneParts/makefile src/utils/bedGeneParts/makefile
new file mode 100644
index 0000000..9d0c110
--- /dev/null
+++ src/utils/bedGeneParts/makefile
@@ -0,0 +1,26 @@
+include ../../inc/common.mk
+
+L += -lm
+MYLIBDIR = ../../lib/${MACHTYPE}
+MYLIBS =  ${MYLIBDIR}/jkweb.a
+
+A = bedGeneParts
+O = bedGeneParts.o
+
+bedGeneParts: ${O} ${MYLIBS}
+	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L
+	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
+
+compile:: ${O}
+	${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
+
+clean::
+	rm -f ${A}${EXE} ${O}
+
+test:
+	bedGeneParts firstExon test.in firstExon.out
+	diff firstExon.expected firstExon.out
+	bedGeneParts introns test.in introns.out
+	diff introns.expected introns.out
+	bedGeneParts promoter test.in promoter.out
+	diff promoter.expected promoter.out