d1315ddd4b44f6cf470237caa5f054dc0e24b798
kent
  Tue Mar 22 15:49:03 2011 -0700
Utility to extract coordinates for promoters, introns, first exon of bed seems to work.
diff --git src/utils/bedGeneParts/introns.expected src/utils/bedGeneParts/introns.expected
new file mode 100644
index 0000000..71dc492
--- /dev/null
+++ src/utils/bedGeneParts/introns.expected
@@ -0,0 +1,7 @@
+chr14	75747370	75747485	uc001xro.2	0	+	75747370	75747485	0	1	115,	0,
+chr2	99743639	99757530	uc002szj.1	0	-	99743639	99757530	0	1	13891,	0,
+chr12	104345408	104359293	uc001tkf.3	0	-	104345408	104359293	0	2	1783,11981,	0,1904,
+chr1	46153947	46158875	uc001cor.1	0	+	46153947	46158875	0	2	2698,2093,	0,2835,
+chr17	48134009	48166473	uc010dbm.2	0	+	48134009	48166473	0	24	7431,323,3448,2538,380,467,1733,139,167,924,72,590,108,292,257,598,81,539,149,176,704,934,6335,1240,	0,7559,7962,11660,14285,14873,15537,17359,17635,17889,18881,19090,19830,20036,20476,20802,21480,21639,22281,22613,22912,23730,24763,31224,
+chr6	30887625	30893885	uc011dnd.1	0	+	30887625	30893885	0	18	240,116,231,315,88,283,233,120,140,151,123,127,121,848,713,158,160,100,	0,368,588,901,1293,1457,1843,2147,2393,2706,2926,3128,3383,3657,4712,5537,5871,6160,
+chr20	5528496	5564926	uc002wmd.3	0	-	5528496	5564926	0	14	10094,578,1120,1388,3486,1654,710,2586,3675,1443,270,2401,1396,4149,	0,10255,10969,12226,13680,17228,18922,19710,22389,26119,27695,28128,30761,32281,