Commits for tdreszer
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v249_preview2 to v249_base (2011-03-22 to 2011-03-29) v249
- I had let CRLFs seep in while editing in windows.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHmm.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- Fixed a bug from unremoved older code.
- src/hg/lib/encode/encodeExp.c - lines changed 1, context: html, text, full: html, text
- Better management of mdb vars and cv terms string literals in anticilation of splitting out cv lib. Also removed the varType once and for all
- Add navigation link to downloads search
- src/hg/hgFileUi/hgFileUi.c - lines changed 7, context: html, text, full: html, text
- Added respect for quotes in a couple of places.
- Little more robust handling of one case of respect quotes.
- Fixed bug on name/description search and fleshed out wild card and quoted strings in description search
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 43, context: html, text, full: html, text
- Reduce limit on number of found files to 1000, because 200 takes too long.
- Added page of search options for ENCODE files nad tracks. Also made attempt at using CSS instead of our usual tables within tables within tables to make borders to things.
- src/hg/htdocs/ENCODE/index.html - lines changed 3, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/search.html - lines changed 91, context: html, text, full: html, text
- Added 'files search buttons to downloads pages
- src/hg/htdocs/ENCODE/downloads.html - lines changed 209, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/downloadsMouse.html - lines changed 56, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/search.html - lines changed 1, context: html, text, full: html, text
- Added a left menu search item under mouse too.
- src/hg/htdocs/ENCODE/index.html - lines changed 1, context: html, text, full: html, text
- Split out the cv routines into their own lib file, but have yet to rename any of the APIs
- Renamed a bunch of mdbCv APIs to cv APIs.
- src/hg/lib/searchTracks.c - lines changed 11, context: html, text, full: html, text
- Made mdb dependent upon cv defines. Made hgEncodeVocab use cv defines.
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 117, context: html, text, full: html, text
- Katrina prefers 'File Search' to 'Downloads Search'
- src/hg/hgFileUi/hgFileUi.c - lines changed 1, context: html, text, full: html, text
- Minor change to the experimentifier output as requested by Cricket.
- Now both name and description searches match each word, accept wildcards and respect quotes
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 46, context: html, text, full: html, text
- Corrected the about message at the bottom of the page.
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 21, context: html, text, full: html, text
- Added useful functions to mdb, including encode specific ones. Fixed encodeExp retreival by mdb obj.
- src/hg/encode/encodeExp/encodeExp.c - lines changed 12, context: html, text, full: html, text
- src/hg/inc/encode/encodeExp.h - lines changed 1, context: html, text, full: html, text
- src/hg/lib/encode/encodeExp.c - lines changed 74, context: html, text, full: html, text
- Needed to expose mdbVarsFree()
- Needed to protext NULLs when inserting into encodeExp table.
- src/hg/inc/encode/encodeExp.h - lines changed 4, context: html, text, full: html, text
- src/hg/lib/encode/encodeExp.c - lines changed 44, context: html, text, full: html, text
- Clarified a message to Kate
- src/hg/encode/encodeExp/encodeExp.c - lines changed 8, context: html, text, full: html, text
- redmine 1876. Hopefully fixed. Subtracks were going through limitVisibility() before their items were loaded.
- src/hg/hgTracks/simpleTracks.c - lines changed 23, context: html, text, full: html, text
- Added text about pooled replicates as per Katrina and Kate request.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html - lines changed 14, context: html, text, full: html, text
- Standardized the liftOver note as per Katrina's request.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html - lines changed 3, context: html, text, full: html, text
- Preparing for pushQ entry
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeBroadHmm.release1.notes - lines changed 62, context: html, text, full: html, text
- Checking in old and newer doc of broad HMM
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 25, context: html, text, full: html, text
- Addressed a bug in description searches and slightly streamlined.
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 47, context: html, text, full: html, text
- These old tracks needed metadata lines replaced with mdb table entries
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/makefile - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeMapability.ra - lines changed 162, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriBip.ra - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriNRE.ra - lines changed 69, context: html, text, full: html, text
- These old tracks needed metadata lines replaced with mdb table entries
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 16, context: html, text, full: html, text
- Moved perhaps the last of the metadata lines from trackDb to metaDb.
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUmasshaTfbsValid.ra - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 30, context: html, text, full: html, text
- More metadata lines removed from trackDb but all of these should already have been in the mdb.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 104, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 44, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.ra - lines changed 58, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.ra - lines changed 6, context: html, text, full: html, text
- Mistakenly took out metadata lines from beta/public versions. They were already removed from alpha versions.
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 44, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.ra - lines changed 6, context: html, text, full: html, text
- File search should not advertise support for quoted string search, since new lines, etc. in target tdb->html can result in false negatives.
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 3, context: html, text, full: html, text
- Round and round. Split the tracks that are having their metadata lines removed into alpha aand beta,public versions.
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 185, context: html, text, full: html, text
- Ensure the backgound floret is used but avoid the overhead that hgTracks uses to acheive this.
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 13, context: html, text, full: html, text
- Fixed bug that Kate found.
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