Commits for vsmalladi

v249_preview2 to v249_base (2011-03-22 to 2011-03-29) v249

• Fixed labeling of cell line K562 to ucdavis variant K562b. Updated antibody H3K27me3 -> H3K27me3B. Updated experiment NT2-D1/H3K9ac -> NT2-D1/H3K9acB to be associated with the correct anitbodies.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 163, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 50, context: html, text, full: html, text
• Fixed the incorrect labeling of control as std rather than UCD on 4 experiments for the NT2-D1 cell line.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 15, context: html, text, full: html, text
• Fixed controlId's that were NT2_D1/None/Input/UCDavis -> NT2-D1/None/Input/UCDavis
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 19, context: html, text, full: html, text
• Added submission 3839, which has the inputs of k562b and U2SO that exist on SYDH TFBS track, but are also used in the SYDH Histone track.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 141, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 19, context: html, text, full: html, text
• Merge branch 'master' into Development
• Removed metadata line and replaced with just subId and dateSubmitted as pipeline now makes tracDb.ra enteries.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 9, context: html, text, full: html, text
• Added comprehensive notes section. Updated downloads page to be fileSortOrder. First pass at short and long labels.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 67, context: html, text, full: html, text
• Fixed shortLabels so that they fit with 17 character limit. Also removed extranous comment line about data being through Jun 2010 freeze.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 33, context: html, text, full: html, text
• Fixed replicate naming for inputs in meta-data. Updated the fileSortOrder and sortOrder for the track to have fields that would help users filter experiments.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 2, context: html, text, full: html, text
• Release 1 notes for Sydh Histone.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhHistone.release1.notes - lines changed 185, context: html, text, full: html, text
• Merge branch 'Development'
• Added 14 submissions with appropriate meta-data. Should fix redmine issues: 3057 and 1494. Also fixed typo's in date format in meta-data.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 4532, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 801, context: html, text, full: html, text
• Added subId 3815.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 20, context: html, text, full: html, text
• Added provisional comments to RA enteries that were updated in commit: f2bfbddbbc73adb2ec00232eaf1fdda4890849cb so that Melissa can review them.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 9, context: html, text, full: html, text