19eaeb4d65c6962e516fb23474643ba754c32ea1
angie
  Fri Feb 11 10:52:15 2011 -0800
Feature #2821 (VCF parser): works on a 1000 Genomes pilot release VCF+tabix file with genotypes.[Note: this is a squash of 6 commits, developed off in my vcf branch.]

diff --git src/inc/linefile.h src/inc/linefile.h
index b84127a..62ccc3a 100644
--- src/inc/linefile.h
+++ src/inc/linefile.h
@@ -210,29 +210,29 @@
 
 void lineFileSetUniqueMetaData(struct lineFile *lf);
 /* suppress duplicate lines in metadata */
 
 
 void lineFileRemoveInitialCustomTrackLines(struct lineFile *lf);
 /* remove initial browser and track lines */
 
 /*----- Optionally-compiled wrapper on tabix (compression + indexing): -----*/
 
 #define COMPILE_WITH_TABIX "%s: Sorry, this functionality is available only when\n" \
     "you have installed the tabix library from\n" \
      "http://samtools.sourceforge.net/ and rebuilt kent/src with USE_TABIX=1\n" \
      "(see http://genomewiki.ucsc.edu/index.php/Build_Environment_Variables)."
 
-struct lineFile *lineFileOnTabix(char *fileName, bool zTerm);
+struct lineFile *lineFileOnTabix(char *fileOrUrl, bool zTerm);
 /* Wrap a line file around a data file that has been compressed and indexed
  * by the tabix command line program.  The index file <fileName>.tbi must be
  * readable in addition to fileName. If there's a problem, warn & return NULL.
  * This works only if kent/src has been compiled with USE_TABIX=1 and linked
  * with the tabix C library. */
 
 boolean lineFileSetTabixRegion(struct lineFile *lf, char *seqName, int start, int end);
 /* Assuming lf was created by lineFileOnTabix, tell tabix to seek to the specified region
- * and return TRUE (or if unable, return FALSE). */
+ * and return TRUE (or if there are no items in region, return FALSE). */
 
 #endif /* LINEFILE_H */