File Changes for cricket

v248_base to v249_preview (2011-03-08 to 2011-03-15) v249

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    Added fileType txt
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisChiaPet.release1.notes
  • lines changed 0, context: html, text, full: html, text
    Release notes for GisChiaPet
  • lines changed 176, context: html, text, full: html, text
    Added better release notes for Chia Pet
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 7, context: html, text, full: html, text
    Added SNP dataTye
  • lines changed 20, context: html, text, full: html, text
    Commented out submitPath and docId for now
  • lines changed 29, context: html, text, full: html, text
    Removed the , in the treatment description, replaced with a with
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBuOrchid.ra
  • lines changed 36, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 4537, context: html, text, full: html, text
    Added the new elements data and some of the replacement data
  • lines changed 578, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeDukeAffyExon.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisDnaPet.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 298, context: html, text, full: html, text
    Changed to have the one with a treatment show as a cell type, for Tier 1 and Tier 2 to filter to the top
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl27.ra
  • lines changed 147, context: html, text, full: html, text
    Cleaned up the meta data and the downloads display
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylArray.ra
  • lines changed 1466, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 2, context: html, text, full: html, text
    added exp vars
  • lines changed 198, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
  • lines changed 230, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyTiling.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunySwitchgear.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra
  • lines changed 275, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 119, context: html, text, full: html, text
    resubmitted data so the metaData Changed
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwChIPSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 2, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 178, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 144, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleRnaSeq.ra
  • lines changed 66, context: html, text, full: html, text
    Changed the polyA+ to polyA- for K562
  • lines changed 2, context: html, text, full: html, text
    Changed two typos in the fileNames
  • lines changed 6, context: html, text, full: html, text
    Added experimental variables to all composites
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 1, context: html, text, full: html, text
    Added the new elements data and some of the replacement data
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 10, context: html, text, full: html, text
    Added a subheader and explained where you could get downloads
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 284, context: html, text, full: html, text
    Changed to have the one with a treatment show as a cell type, for Tier 1 and Tier 2 to filter to the top
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra
  • lines changed 24, context: html, text, full: html, text
    Removed the colors and the itemRGB
  • lines changed 8, context: html, text, full: html, text
    Cleaned up the meta data and the downloads display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.ra
  • lines changed 8, context: html, text, full: html, text
    Changed the polyA+ to polyA- for K562