File Changes for hiram

v248_base to v249_preview (2011-03-08 to 2011-03-15) v249

• src/hg/autoXml/makefile
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    eliminate use of HOME in MYLIBDIR
• src/hg/bedOverlap/makefile
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    eliminate use of HOME in MYLIBDIR
• src/hg/chimpStuff/chimpHiQualDiffs/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/chimpStuff/chimpSuperQuals/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/geneBounds/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/geneOverlap/makefile
  • lines changed 2, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/logCrawl/hgAccessCrawl/makefile
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    eliminate use of HOME in MYLIBDIR
• src/hg/makeDb/doc/panTro3.txt
  • lines changed 83, context: html, text, full: html, text
    only monDom5 and mm9 chain net left to go
• src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/horse/trackDb.chainNet.ra
  • lines changed 6, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
  • lines changed 16, context: html, text, full: html, text
    adding chain net overrides for all panTro3 related chain net combinations
• src/hg/oneShot/doOmimAv/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/dupedInTable/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/kgName/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/musAliAt/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/protDat/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/testCart/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/testTableExists/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/weedKnownBlastTab/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/oneShot/weedTab/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/hg/pslToFa/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/balancedTree/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/findContigsWithClones/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/foo2/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/formatFastaSeq/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/mafFindZero/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/newStitch4/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/oneShot/test/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/parasol/dataSim/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/product/scripts/fetchMinimalGbdb.sh
  • lines changed 4, context: html, text, full: html, text
    update to include trix and metaDb files and properly rsync js and style directories
• src/product/scripts/fetchMinimalGoldenPath.sh
  • lines changed 2, context: html, text, full: html, text
    update to include trix and metaDb files and properly rsync js and style directories
• src/product/scripts/updateHtml.sh
  • lines changed 6, context: html, text, full: html, text
    update to include trix and metaDb files and properly rsync js and style directories
• src/reformat/makeOrf2gene/makefile
  • lines changed 2, context: html, text, full: html, text
    eliminate use of HOME in MYLIBDIR
• src/utils/bigBedSummary/makefile
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    properly clean the executable
• src/utils/bigBedToBed/makefile
  • lines changed 1, context: html, text, full: html, text
    properly clean the executable
• src/utils/bigWigSummary/makefile
  • lines changed 1, context: html, text, full: html, text
    properly clean the executable
• src/utils/bigWigToBedGraph/makefile
  • lines changed 1, context: html, text, full: html, text
    properly clean the executable
• src/utils/makefile
  • lines changed 6, context: html, text, full: html, text
    this clean target wasn't descending into USE_DIRS
  • lines changed 1, context: html, text, full: html, text
    properly clean the executable