Commits for vsmalladi

v248_base to v249_preview (2011-03-08 to 2011-03-15) v249

• Removed wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep1 from metaDb, on recommendation of Flo.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 24, context: html, text, full: html, text
• Removed reference to file wgEncodeHaibTfbsT47dCtcfV0416102Dmso2RawRep2, as per Flo.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 24, context: html, text, full: html, text
• Removed signal: wgEncodeHaibTfbsGm12892Pol24h8V0416102RawRep1 and wgEncodeHaibTfbsT47dCtcfV0416102Dmso2RawRep2, according to Flo.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 18, context: html, text, full: html, text
• Added 8 submissions that included missing data and resubmitted files with updated meta-data.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 1992, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 508, context: html, text, full: html, text
• Merge branch 'Development'
• Changed windowing function from mean to mean+whiskers as requested by QA.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 1, context: html, text, full: html, text
• Added fileSortOrder to track.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.ra - lines changed 1, context: html, text, full: html, text
• Removed 2 fastq files that were accidently left in notes file.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release1.notes - lines changed 2, context: html, text, full: html, text
• Updated the total file counts with accurate number of files available in download files.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release1.notes - lines changed 2, context: html, text, full: html, text
• Removed max-width reference as this doesn't work and is not needed anymore. Redmine issue 486 note 15.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.html - lines changed 2, context: html, text, full: html, text
• Added validation setting that verifies that at least 99.9% of the bams have at most 3 mismatches.
  • src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/stanfordMm9Tfbs.daf - lines changed 2, context: html, text, full: html, text
• Added matchFirst and nmatch options that lab requested.
  • src/hg/encode/DAFs/2.0/stanfordMm9Hist.daf - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/stanfordMm9Tfbs.daf - lines changed 1, context: html, text, full: html, text