Commits for cricket

v249_preview to v249_preview2 (2011-03-15 to 2011-03-22) v249

• Removed bam files from release notes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisChiaPet.release1.notes - lines changed 62, context: html, text, full: html, text
• Fixed fileSort to show the run
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra - lines changed 1, context: html, text, full: html, text
• Trying to sort out which tracks to display for Caltech
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 482, context: html, text, full: html, text
• changed fileNames to match the new ones Brian loaded
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 199, context: html, text, full: html, text
• sorting out files, lots of adding and subtracting of objects
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 4800, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 200, context: html, text, full: html, text
• Improving usage comment
  • src/hg/encode/encodeLoad/doEncodeUnload.pl - lines changed 3, context: html, text, full: html, text
• removed the release tag line and added H1hESC to Tier 1 list
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 2, context: html, text, full: html, text
• Changed the labels for conflicting replicates and explained in the release notes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 78, context: html, text, full: html, text
• Great file sort continues with adding and subtracting objects
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 208, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 84, context: html, text, full: html, text
• Swapped HsmmRep2 for HsmmtRep2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 6, context: html, text, full: html, text