0c54755937c3349d4f2199d37c3180a8e267f0ae
mmaddren
  Thu Mar 10 16:17:49 2011 -0800
Added testing suite for RaFile. Will have to edit slightly in the future once comment implementation is finished.
diff --git python/ucscgenomics/rafile/raFile.py python/ucscgenomics/rafile/raFile.py
deleted file mode 100644
index 6fae82d..0000000
--- python/ucscgenomics/rafile/raFile.py
+++ /dev/null
@@ -1,91 +0,0 @@
-import sys
-import re
-import orderedDict
-
-class RaFile(orderedDict.OrderedDict):
-    """
-    Stores an Ra file in a set of entries, one for each stanza in the file.
-    """
-
-    def __init__(self, entryType):
-       self.__entryType = entryType 
-       orderedDict.OrderedDict.__init__(self)
- 
-    def read(self, filePath):
-        """
-        Reads an rafile stanza by stanza, and internalizes it.
-        """
-
-        file = open(filePath, 'r')
-
-        entry = self.__entryType()
-        stanza = list()
-
-        for line in file:
- 
-            line = line.strip()
-
-            if line.startswith('#'):
-                continue
-
-            if line != '':
-                stanza.append(line)
-            else:
-               name = entry.readStanza(stanza)
-               self[name] = entry
-               entry = self.__entryType()
-               stanza = list()
-
-        file.close()
-
-
-    def __str__(self):
-        str = ''
-        for key in self:
-            str = str + self[key].__str__() + '\n'
-        return str
-
-
-class RaEntry(orderedDict.OrderedDict):
-    """
-    Holds an individual entry in the RaFile.
-    """
-
-    def readStanza(self, stanza):
-        """
-        Populates this entry from a single stanza
-        """
-
-        for line in stanza:
-            self.__readLine(line)
-
-        return self.__readName(stanza[0])
-
-
-    def __readName(self, line):
-        """
-        Extracts the Stanza's name from the value of the first line of the
-        stanza.
-        """
-
-        if len(line.split(' ', 1)) != 2:
-            raise ValueError()
-
-        return line.split(' ', 1)[1].strip()
-
-
-    def __readLine(self, line):
-        """
-        Reads a single line from the stanza, extracting the key-value pair
-        """
-
-        raKey, raVal = map(str, line.split(' ', 1))
-        self[raKey] = raVal
-
-
-    def __str__(self):
-        str = ''
-        for key in self:
-            str = str + key + ' ' + self[key] + '\n'
-        return str
-