Commits for tdreszer
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v250_preview2 to v250_base (2011-04-12 to 2011-04-19) v250
- Fix for redmine 1411. Unchecking subtrack failed to grey matrix CB in 1D matrix.
- One more adjustment to the third state matrix CB for redmine 1411
- Fixed bug that tripped up Kate's encodeExp.
- Removed reference to obsolete countObjs option which Kate tripped on
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 2, context: html, text, full: html, text
- Turned on expId and dccAccession updating in mdbUpdate. Removed old expTbl function from mdbPrint
- src/hg/inc/encode/encodeExp.h - lines changed 3, context: html, text, full: html, text
- src/hg/lib/encode/encodeExp.c - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 89, context: html, text, full: html, text
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 11, context: html, text, full: html, text
- Fixed mdbUpdate -encodeExp to not require two rounds when updating both tables.
- src/hg/inc/encode/encodeExp.h - lines changed 2, context: html, text, full: html, text
- src/hg/lib/encode/encodeExp.c - lines changed 14, context: html, text, full: html, text
- Ouch. I stepped on Galt's last change. Luckily Angie caught it in code review.
- Added routine to find the last non-whitespace char in a string
- Add simple support for reading lines with continuation characters as single lines.
- Initial checkin of continuation char support in RA files
- src/hg/lib/trackDbCustom.c - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDbPatch/trackDbPatch.c - lines changed 37, context: html, text, full: html, text
- The param should have been TRE=joined
- Checked in minor changes from Jim's review. Only think of consequence here is the dyStringLen macro had been using strlen, when the stringSize is part of the structure
- Streamlined and optimized continuation line code as Jim's suggests this is critical path.
- src/hg/lib/trackDbCustom.c - lines changed 4, context: html, text, full: html, text
- Updated tests that should have been updated long ago.
- src/hg/encode/encodePatchTdb/tests/expected/add1.ra - lines changed 1, context: html, text, full: html, text
- src/hg/encode/encodePatchTdb/tests/expected/add3.ra - lines changed 3, context: html, text, full: html, text
- src/hg/encode/encodePatchTdb/tests/expected/composite.ra - lines changed 1, context: html, text, full: html, text
- src/hg/encode/encodePatchTdb/tests/expected/replace1.ra - lines changed 1, context: html, text, full: html, text
- src/hg/encode/encodePatchTdb/tests/expected/replace3.ra - lines changed 3, context: html, text, full: html, text
- src/hg/encode/encodePatchTdb/tests/expected/replace3NoComment.ra - lines changed 3, context: html, text, full: html, text
- Fixed uploader bug that I caused and Angie caught in code review.
- src/hg/encode/encodeLoad/doEncodeUnload.pl - lines changed 1, context: html, text, full: html, text
- Fixed an inefficient macro from long ago. Jim caought this in code review
- Insignificant edit
- Fixed file naming bug that Venkat found.
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 2, context: html, text, full: html, text
- Another one found by Venkat
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
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