c5d2c70c02d3cd9d79b2db8347c917dcab791b11
angie
  Mon Apr 4 16:32:01 2011 -0700
Track #1684 (SNPs 132 (dbSNP)): De-emphasizing dbSNP's "clinically-associated" flag as suggested by Brooke.

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index d253d14..f14b65b 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -16520,39 +16520,39 @@
 	}
     printf("</TR></TABLE>\n");
     if (gotNonIntN)
 	printf(" <em>Note: dbSNP extrapolates allele counts from reported frequencies and "
 	       "reported 2N sample sizes (total %d); non-integer allele count may imply "
 	       "an inaccuracy in one of the reported numbers.</em><BR>\n", total2N);
     }
 else
     puts("</TABLE>");
 if (isNotEmpty(snp->bitfields) && differentString(snp->bitfields, "unknown"))
     {
     printf("<BR><B><A HREF=\"#Bitfields\">Miscellaneous properties annotated by dbSNP</A>:"
 	   "</B>\n\n");
     struct slName *bitfields = slNameListFromComma(snp->bitfields);
     if (slNameInList(bitfields, "clinically-assoc"))
-	printf("<BR> <B>***clinically associated***</B> "
-	       "(SNP is in OMIM/OMIA and/or "
-	       "at least one submitter is a Locus-Specific Database)\n");
+	printf("<BR> SNP is in OMIM/OMIA and/or "
+	       "at least one submitter is a Locus-Specific Database "
+	       "(&quot;clinically associated&quot;)\n");
     if (slNameInList(bitfields, "has-omim-omia"))
 	printf("<BR> SNP is in OMIM/OMIA\n");
     if (slNameInList(bitfields, "microattr-tpa"))
 	printf("<BR> SNP has a microattribution or third-party annotation\n");
     if (slNameInList(bitfields, "submitted-by-lsdb"))
-	printf("<BR> SNP was submitted by LSDB\n");
+	printf("<BR> SNP was submitted by Locus-Specific Database\n");
     if (slNameInList(bitfields, "maf-5-all-pops"))
 	printf("<BR> Minor Allele Frequency is at least 5%% in all "
 	       "populations assayed\n");
     else if (slNameInList(bitfields, "maf-5-some-pop"))
 	printf("<BR> Minor Allele Frequency is at least 5%% in at least one "
 	       "population assayed\n");
     if (slNameInList(bitfields, "genotype-conflict"))
 	printf("<BR> Quality check: Different genotypes have been submitted "
 	       "for the same individual\n");
     if (slNameInList(bitfields, "rs-cluster-nonoverlapping-alleles"))
 	printf("<BR> Quality check: The reference SNP cluster contains "
 	       "submitted SNPs with non-overlapping alleles\n");
     if (slNameInList(bitfields, "observed-mismatch"))
 	printf("<BR> Quality check: The reference sequence allele at the "
 	       "mapped position is not present in the SNP allele list\n");