File Changes for cricket

v249_base to v250_preview (2011-03-29 to 2011-04-05) v250

• src/hg/encode/DAFs/2.0/gisChiaPet.daf
  • lines changed 2, context: html, text, full: html, text
    added fastq required, at suggestion of Brian
• src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaCnv.release2.notes
  • lines changed 76, context: html, text, full: html, text
    Release notes for Color Change for CNV
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGisRnaPet.release1.notes
  • lines changed 74, context: html, text, full: html, text
    Removed 4 experiments due to suspect files
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 257, context: html, text, full: html, text
    First draft at adding views to the CV
  • lines changed 12, context: html, text, full: html, text
    Changed the dataType to Genotype. This will make it consistent with other tracks that all data in the same composite has the same dataType
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaCnv.ra
  • lines changed 52, context: html, text, full: html, text
    Changed the colors in the tables, changed the table names to V2, changed the html to reflect the new colors of red, blue, orange
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.new.html
  • lines changed 95, context: html, text, full: html, text
    Changed the colors in the tables, changed the table names to V2, changed the html to reflect the new colors of red, blue, orange
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.new.ra
  • lines changed 4, context: html, text, full: html, text
    Changed the colors in the tables, changed the table names to V2, changed the html to reflect the new colors of red, blue, orange
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBuOrchid.ra
  • lines changed 35, context: html, text, full: html, text
    Recovered lost data
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 2575, context: html, text, full: html, text
    Removed errant Na in the file names of the fastqs
  • lines changed 84, context: html, text, full: html, text
    Making all versions of Minus and Plus Sig, Signal, Raw into MinusRawSignal
  • lines changed 1, context: html, text, full: html, text
    Making all versions of Minus and Plus Sig, Signal, Raw into MinusRawSignal, THIS TIME WITH MAGIC NUMBER
  • lines changed 40, context: html, text, full: html, text
    Consolidate ExonsGene and ExonGen and remove Aligns as views
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 1003, context: html, text, full: html, text
    Making all versions of Minus and Plus Sig, Signal, Raw into MinusRawSignal
  • lines changed 1, context: html, text, full: html, text
    Making all versions of Minus and Plus Sig, Signal, Raw into MinusRawSignal, THIS TIME WITH MAGIC NUMBER
  • lines changed 57, context: html, text, full: html, text
    Consolidate ExonsGene and ExonGen and remove Aligns as views
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 53, context: html, text, full: html, text
    added mean+whiskers, fileSortOrder, changed release tags to new method, fixed subgroup labels, added missing information in the mdb
  • lines changed 45, context: html, text, full: html, text
    Trying to commit again to deal with the fact that hgwdev hung on my previous git commit
  • lines changed 519, context: html, text, full: html, text
    Removed 4 experiments due to suspect files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 36, context: html, text, full: html, text
    Standardized obtainedBy to lab names from PI names
  • lines changed 91, context: html, text, full: html, text
    Changed the dataType to Genotype. This will make it consistent with other tracks that all data in the same composite has the same dataType
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 405, context: html, text, full: html, text
    More re-shuffling of metadata terms and filetypes
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 31, context: html, text, full: html, text
    continuing to consolidate views TranscriptGencV3 -> V3c, Fastq -> RawData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 5, context: html, text, full: html, text
    Trying to commit again to deal with the fact that hgwdev hung on my previous git commit
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunySwitchgear.ra
  • lines changed 3, context: html, text, full: html, text
    changed the target protien to be under antibody even though there is no antibody in this experiment so that the links would work
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    added mean+whiskers, fileSortOrder, changed release tags to new method, fixed subgroup labels, added missing information in the mdb
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 126, context: html, text, full: html, text
    Changed the long labels for the Contigs, uncertain if we will display the Junctions
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra
  • lines changed 12, context: html, text, full: html, text
    Sort the Tier 1 to the top
  • lines changed 13, context: html, text, full: html, text
    Changed Tier 2 to sort to the top
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 104, context: html, text, full: html, text
    added mean+whiskers, fileSortOrder, changed release tags to new method, fixed subgroup labels, added missing information in the mdb
  • lines changed 18, context: html, text, full: html, text
    Removed 4 experiments due to suspect files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the dataType to Genotype. This will make it consistent with other tracks that all data in the same composite has the same dataType
  • lines changed 5, context: html, text, full: html, text
    Added origAssembly for the lifted tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 52, context: html, text, full: html, text
    More re-shuffling of metadata terms and filetypes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Changed label for A549 to be correct from A459
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 26, context: html, text, full: html, text
    changed long labels to have RIP-chip
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.ra
  • lines changed 3, context: html, text, full: html, text
    changed the target protien to be under antibody even though there is no antibody in this experiment so that the links would work