072b4c34cf42b68d807ce0246dd220b70500a351
kent
  Tue Mar 29 15:31:43 2011 -0700
Adding new utilities to makefile.
diff --git src/utils/makefile src/utils/makefile
index 7b88a31..056a462 100644
--- src/utils/makefile
+++ src/utils/makefile
@@ -44,45 +44,51 @@
 SCRIPT_FILES = \
         agpToLift \
         iSync \
         lodToBedScore \
 	mkMafFrames.pl
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
 	aNotB \
 	addCols \
 	ave \
 	aveCols \
 	bedClip \
+	bedCommonRegions \
+	bedGeneParts \
 	bedGraphToBigWig \
 	bedRemoveOverlap \
+	bedRestrictToPositions \
 	bedToBigBed \
 	bigBedInfo \
 	bigBedSummary \
 	bigBedToBed \
+	bigWigAverageOverBed \
 	bigWigInfo \
+	bigWigMerge \
 	bigWigSummary \
 	bigWigToBedGraph \
 	bigWigToWig \
 	calc \
 	catDir \
 	catUncomment \
 	ccCp \
 	chopFaLines \
+	colTransform \
 	countChars \
 	convolve \
 	cvsTools \
 	detab \
 	endsInLf \
 	fastqToFa \
 	faAlign \
 	faCmp \
 	faCount \
 	faFilterN \
 	faFilter \
 	faFlyBaseToUcsc \
 	faFrag \
 	faGapLocs \
 	faGapSizes \