000286958e0ab18c45c7b4f9e8d0d52e15f35d55
kent
  Fri Apr 1 21:42:54 2011 -0700
Adding firstCodingSplice as a region you can get with bedGeneParts.
diff --git src/utils/bedGeneParts/makefile src/utils/bedGeneParts/makefile
index 9d0c110..7e9d44e 100644
--- src/utils/bedGeneParts/makefile
+++ src/utils/bedGeneParts/makefile
@@ -1,26 +1,28 @@
 include ../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkweb.a
 
 A = bedGeneParts
 O = bedGeneParts.o
 
 bedGeneParts: ${O} ${MYLIBS}
 	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 compile:: ${O}
 	${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
 
 clean::
 	rm -f ${A}${EXE} ${O}
 
 test:
 	bedGeneParts firstExon test.in firstExon.out
 	diff firstExon.expected firstExon.out
 	bedGeneParts introns test.in introns.out
 	diff introns.expected introns.out
 	bedGeneParts promoter test.in promoter.out
 	diff promoter.expected promoter.out
+	bedGeneParts firstCodingSplice test.in firstCodingSplice.out
+	diff firstCodingSplice.expected firstCodingSplice.out