File Changes for cricket

v251_preview2 to v251_base (2011-05-03 to 2011-05-10) v251

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethylRrbs.release2.notes
  • lines changed 12, context: html, text, full: html, text
    DoubleChecking that the realease notes got the last few fastqs
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeYaleRnaSeq.release1.notes
  • lines changed 52, context: html, text, full: html, text
    Dropping all datasets that are suspect and replaceing in the pushQ
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 5, context: html, text, full: html, text
    Adding differentiation as a treatment for Wold
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 108, context: html, text, full: html, text
    Made a lot of changes according to the labs spreadsheet, issue 55
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSangerGencode.ra
  • lines changed 6, context: html, text, full: html, text
    Adding a composite stanza with my first draft of expVars
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra
  • lines changed 2, context: html, text, full: html, text
    Adding rnaExtract as an expVar to work with hg19 data
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAffyRnaChip.ra
  • lines changed 5308, context: html, text, full: html, text
    Correcting two mdbPrint's gone wrong. This is an attempt to return the status of these files to having the dccAccession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisDnaPet.ra
  • lines changed 70, context: html, text, full: html, text
    Correcting two mdbPrint's gone wrong. This is an attempt to return the status of these files to having the dccAccession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 1277, context: html, text, full: html, text
    Adding the new submissions, some of which are replacements
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 9, context: html, text, full: html, text
    Added the GM12878 back in with the new file
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the expVars
  • lines changed 2, context: html, text, full: html, text
    removed 2 suspicious geoAccession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylSeq.ra
  • lines changed 168, context: html, text, full: html, text
    began the cleanup of the metaData for this track including adding fileSortOrder to the trackDb
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 174, context: html, text, full: html, text
    Adding new submissions, mostly clusters and some replacement GM12878, cleaning up metaData so that the table looks clear byt filiing in missing information
  • lines changed 1060, context: html, text, full: html, text
    massive rename to make sure Signals were not called Clusters or Raw
  • lines changed 26, context: html, text, full: html, text
    adding the Clusters for the I40
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyRipSeq.ra
  • lines changed 41, context: html, text, full: html, text
    Final clean up for the pushQ, added the antibody information, changed to mean+whiskers, changed the Input to being off, cleaned up the fileSortOrder
  • lines changed 54, context: html, text, full: html, text
    Added md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUmassDekker5C.ra
  • lines changed 6, context: html, text, full: html, text
    Adding the expVars
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleRnaSeq.ra
  • lines changed 228, context: html, text, full: html, text
    Dropping all datasets that are suspect and replaceing in the pushQ
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 8, context: html, text, full: html, text
    Adding .new files for the trackDb so that we can add fileSortOrder to these tracks
  • lines changed 1, context: html, text, full: html, text
    Changing the release tags to be with the include statement
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.new.ra
  • lines changed 247, context: html, text, full: html, text
    Correcting two mdbPrint's gone wrong. This is an attempt to return the status of these files to having the dccAccession numbers
  • lines changed 1, context: html, text, full: html, text
    Adding .new files for the trackDb so that we can add fileSortOrder to these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 36, context: html, text, full: html, text
    Changed the default on/off
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 258, context: html, text, full: html, text
    Changed the defualt on and off and the celltype for ordering
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 22, context: html, text, full: html, text
    Changed the default on/off
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.new.ra
  • lines changed 81, context: html, text, full: html, text
    Adding .new files for the trackDb so that we can add fileSortOrder to these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 67, context: html, text, full: html, text
    Changed the cellline names to improve the sort
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.new.ra
  • lines changed 174, context: html, text, full: html, text
    Correcting two mdbPrint's gone wrong. This is an attempt to return the status of these files to having the dccAccession numbers
  • lines changed 1, context: html, text, full: html, text
    Adding .new files for the trackDb so that we can add fileSortOrder to these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 4, context: html, text, full: html, text
    Added the GM12878 back in with the new file
  • lines changed 2, context: html, text, full: html, text
    Fixed the parent name and cell line to merge properly
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra
  • lines changed 1, context: html, text, full: html, text
    began the cleanup of the metaData for this track including adding fileSortOrder to the trackDb
  • lines changed 11, context: html, text, full: html, text
    Changed the cellline names to improve the sort
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 16, context: html, text, full: html, text
    Added the A549 cell line as defualt on
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.ra
  • lines changed 86, context: html, text, full: html, text
    Correcting two mdbPrint's gone wrong. This is an attempt to return the status of these files to having the dccAccession numbers
  • lines changed 2, context: html, text, full: html, text
    Adding .new files for the trackDb so that we can add fileSortOrder to these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 702, context: html, text, full: html, text
    Adding new submissions, mostly clusters and some replacement GM12878, cleaning up metaData so that the table looks clear byt filiing in missing information
  • lines changed 286, context: html, text, full: html, text
    massive rename to make sure Signals were not called Clusters or Raw
  • lines changed 1, context: html, text, full: html, text
    Adding UCSC accesion to the fileSortOrder
  • lines changed 237, context: html, text, full: html, text
    Changed the labels and the defualt on tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html
  • lines changed 102, context: html, text, full: html, text
    Combined the .new and the .html and added contact information
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.new.html
  • lines changed 136, context: html, text, full: html, text
    Combined the .new and the .html and added contact information
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.ra
  • lines changed 26, context: html, text, full: html, text
    Final clean up for the pushQ, added the antibody information, changed to mean+whiskers, changed the Input to being off, cleaned up the fileSortOrder
• src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.html
  • lines changed 26, context: html, text, full: html, text
    Dropping all datasets that are suspect and replaceing in the pushQ
• src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.ra
  • lines changed 93, context: html, text, full: html, text
    Dropping all datasets that are suspect and replaceing in the pushQ
  • lines changed 11, context: html, text, full: html, text
    Changing the release tags to be with the include statement
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra
  • lines changed 1, context: html, text, full: html, text
    adding the Clusters for the I40