aab4f66a2aca5293f3536cc1d1438b17d2b09dfd
tdreszer
  Thu May 5 16:14:15 2011 -0700
A large set of tiny changes.  These fix a lot of discrepencies with bgcolor and font color declarations which were tripping up docttype 4.01.
diff --git src/hg/hgc/mafClick.c src/hg/hgc/mafClick.c
index 7f0bf04..8c84b7c 100644
--- src/hg/hgc/mafClick.c
+++ src/hg/hgc/mafClick.c
@@ -25,39 +25,39 @@
 /* Write capital letters in blue. */
 {
 boolean isBlue = FALSE;
 int i;
 for (i=0; i<size; ++i)
     {
       if (r!=NULL && s[i]==r[i])
 	fprintf(f, ".");
       else
 	{
 	  char c = s[i];
 	  if (isupper(c))
 	    {
 	      if (!isBlue)
 		{
-		  fprintf(f, "<FONT COLOR=\"#0000FF\">");
+		  fprintf(f, "<span style='color:#0000FF;'>");
 		  isBlue = TRUE;
 		}
 	    }
 	  else if (islower(c))
 	    {
 	      if (isBlue)
 		{
-		  fprintf(f, "</FONT>");
+		  fprintf(f, "</span>");
 		  isBlue = FALSE;
 		}
 	    }
 	  fprintf(f, "%c", c);
 	}
     }
 
 if (isBlue)
     fprintf(f, "</FONT>");
 }
 
 void initSummaryLine(char *summaryLine, int size, int val)
 /* Fill summary line with stars and null terminate */
 {
 int i;
@@ -797,39 +797,39 @@
 if (isProtein) 
     step = 3;
 else 
     step=1;
 for (i=0; i<size; i=i+step)
     {
       if (r!=NULL && s[i]==r[i])
 	fprintf(f, ".");
       else
 	{
 	  char c = s[i];
 	  if (isupper(c))
 	    {
 	      if (!isBlue)
 		{
-		  fprintf(f, "<FONT COLOR=\"#0000FF\">");
+		  fprintf(f, "<span style='color:#0000FF;'>");
 		  isBlue = TRUE;
 		}
 	    }
 	  else if (islower(c))
 	    {
 	      if (isBlue)
 		{
-		  fprintf(f, "</FONT>");
+		  fprintf(f, "</span>");
 		  isBlue = FALSE;
 		}
 	    }
 	  /* look up codon to get AA if it is protein */
 	  if (isProtein) 
 		{
 		if (c != '-')
 		    {
 		    c=lookupCodon(s+(long)(i-offset%3));
 		    /* bypass the first partial codon */
 		    if ((i == 0) && (c == 'X')) c= ' ';
 		    if ((i == (size-1)) && (c == 'X')) c= ' ';
 		    }
 		}
 	  fprintf(f, "%c", c);