47790b284b066c70471a34a5a70d0277d88ee6ba
tdreszer
  Fri May 6 10:47:51 2011 -0700
Another insignificant font color change that I forgot to check in yesterday.
diff --git src/xenoAli/smithWat/smithWat.c src/xenoAli/smithWat/smithWat.c
index 7e53112..720fdaf 100644
--- src/xenoAli/smithWat/smithWat.c
+++ src/xenoAli/smithWat/smithWat.c
@@ -26,41 +26,41 @@
     };
 
 void dumpMatrix(struct dynCell *matrix, int qDim, int tDim, struct dynCell *end)
 {
 int qIx, tIx;
 struct dynCell *cell, *parent;
 
 printf("<A HREF=#end>shortcut to end token</A>\n");
 for (qIx = 0; qIx < qDim; ++qIx)
     {
     for (tIx = 0; tIx < tDim; ++tIx)
         {
         cell = &matrix[tIx*qDim + qIx];
         parent = cell->parent;
         if (cell == end)
-            uglyf("<A NAME=end></A><FONT COLOR=#FF0000>");
+            uglyf("<A NAME=end></A><span style='color:#FF0000;'>");
         if (parent == NULL)
             uglyf(".");
         else if (parent == cell-1)
             uglyf("^");
         else if (parent == cell-qDim)
             uglyf("<");
         else
             uglyf("\\");
         if (cell == end)
-            uglyf("</FONT>");
+            uglyf("</span>");
         }
     uglyf("\n");
     }
 }
 
 void dynAlign(char *query, char *target, int matchMatrix[256][256], int gapFunc[], int gapFuncLen, FILE *f)
 /* Do dynamic programming to make alignment between query and target, and print it to stdout. */
 {
 int querySize = strlen(query);
 int targetSize = strlen(target);
 int qDim = querySize+1;
 int tDim = targetSize+1;
 int matrixCellCount = qDim * tDim;
 size_t matrixBytes = matrixCellCount * sizeof(struct dynCell);
 struct dynCell *matrix = needLargeMem(matrixBytes);