File Changes for vsmalladi

v251_preview2 to v251_base (2011-05-03 to 2011-05-10) v251

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    Added validation for tissueSourceType so that it can accept either Individual or Pooled or None when the term is not applicable.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Added validation list for the attic meta-data variable.
  • lines changed 37, context: html, text, full: html, text
    Registered 2 cell lines Patski and ZhBTc4. As a consequence had to register strain 129/Ola.
  • lines changed 1, context: html, text, full: html, text
    Added validation for tissueSourceType so that it can accept either Individual or Pooled or None when the term is not applicable.
  • lines changed 2, context: html, text, full: html, text
    Added strain information for ES-Bruce4 and updated registered sex for ZhBTc4 from U -> M.
  • lines changed 5, context: html, text, full: html, text
    Added tissueSourceType for each experiment as provided by the lab. Added new term Both, that identifies that processed data was made from replicates using pooled and individual sampling of tissues.
  • lines changed 31, context: html, text, full: html, text
    Added attic terms into the cv, so that validation is against cv and not a list. Fulfills redmine issue: #3830.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 17, context: html, text, full: html, text
    Updated the CTCF meta-data to be associated with the correct antibody name CTCF_(SC-5916)
  • lines changed 4278, context: html, text, full: html, text
    Updated the metaData to include controlId and labExpId to match hg19. Update meta-data in trackDb and mdb.ra for protocol changes. Dropped meta-data and tracks for data that lab requested to revoke.
  • lines changed 336, context: html, text, full: html, text
    Updated labVersion based on lab recomended information. If lab removed information from field, field was deleted.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
  • lines changed 581, context: html, text, full: html, text
    Updated the metaData to include controlId and labExpId to match hg19. Update meta-data in trackDb and mdb.ra for protocol changes. Dropped meta-data and tracks for data that lab requested to revoke.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 142, context: html, text, full: html, text
    Changed antibody=Control to antibody=Input to match hg18 data.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 169, context: html, text, full: html, text
    Removed Version 1 file meta-data so as not to show up on the RR in fileUi, since deprecated files are still present on the RR.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra
  • lines changed 28, context: html, text, full: html, text
    Truncated longLabel ENCODE/Stanford/Yale/Davis/Harvard -> ENCODE/SYDH
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 443, context: html, text, full: html, text
    Added 8 experiments for TFBS and Histone Track. Update long and short labels. Errors in long labels were 'TFBS TFBS' and 'Histone Histone'.
  • lines changed 154, context: html, text, full: html, text
    Added tissueSourceType for each experiment as provided by the lab. Added new term Both, that identifies that processed data was made from replicates using pooled and individual sampling of tissues.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 157, context: html, text, full: html, text
    Added experiment Spleen Pol2.
  • lines changed 755, context: html, text, full: html, text
    Added 8 experiments for TFBS and Histone Track. Update long and short labels. Errors in long labels were 'TFBS TFBS' and 'Histone Histone'.
  • lines changed 164, context: html, text, full: html, text
    Added tissueSourceType for each experiment as provided by the lab. Added new term Both, that identifies that processed data was made from replicates using pooled and individual sampling of tissues.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.ra
  • lines changed 27, context: html, text, full: html, text
    Updated Short label abbreviation for Signal from Sig -> Sg.
  • lines changed 39, context: html, text, full: html, text
    Added 8 experiments for TFBS and Histone Track. Update long and short labels. Errors in long labels were 'TFBS TFBS' and 'Histone Histone'.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.ra
  • lines changed 18, context: html, text, full: html, text
    Added experiment Spleen Pol2.
  • lines changed 27, context: html, text, full: html, text
    Updated Short label abbreviation for Signal from Sig -> Sg.
  • lines changed 94, context: html, text, full: html, text
    Added 8 experiments for TFBS and Histone Track. Update long and short labels. Errors in long labels were 'TFBS TFBS' and 'Histone Histone'.