Commits for angie

v250_base to v251_preview (2011-04-19 to 2011-04-26) v251

• Track #34 (dbVar): oops, forgot NULL check -> segv when boringaggregate variants (sv) are excluded.
  • src/hg/hgTracks/gvfTrack.c - lines changed 9, context: html, text, full: html, text
• Fixed typo that broke snp132's coloring by bitfields.
  • src/hg/hgTracks/variation.c - lines changed 1, context: html, text, full: html, text
• Track #34 (dbVar): Added search spec for iscaRetrospective. Its termRegex can be used for any dbVar tracks.
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 6, context: html, text, full: html, text
• Track #34 (dbVar): reloaded iscaRetrospective track to drop the boringaggregate variants (sv) and to keep only the better-annotated supporting variants (ssv).
  • src/hg/makeDb/doc/hg18.txt - lines changed 4, context: html, text, full: html, text
• Feature #3476 (next block arrows for OMIM tracks): refactored sharedcode from several tracks (Superfamily, GAD, DECIPHER, OMIM*) with similar drawing and mouseover features, made the shared code compatible with nextPrevExon code (which for simple bed tracks like these is more like zap-to-edge), and added simpleBedNextPrevEdge to their *Methods.
  • src/hg/hgTracks/simpleTracks.c - lines changed 953, context: html, text, full: html, text
• Merge branch 'omim'
• Bug #3537 (edit of filter in table browser truncates Free-form query string):the free-form query string needs to be htmlEncoded so that quotes don't mess up the HTML parsing of the text input box.
  • src/hg/hgTables/filterFields.c - lines changed 4, context: html, text, full: html, text
• Feature #3476 (zap-to-edge arrows for OMIM tracks): toggle "Left Edge"and "Right Edge" default labels when display is in reverse mode.
  • src/hg/hgTracks/bedTrack.c - lines changed 4, context: html, text, full: html, text