0f988504a45c5863064dcda85f4ba9a92ff53d3b
hiram
Tue Apr 19 13:33:38 2011 -0700
anoCar2 works for Ensembl due to ucscToEnsembl table
diff --git src/hg/hgTracks/hgTracks.c src/hg/hgTracks/hgTracks.c
index 8156832..49c45bd 100644
--- src/hg/hgTracks/hgTracks.c
+++ src/hg/hgTracks/hgTracks.c
@@ -3555,30 +3555,36 @@
{
/* Print Ensembl anchor for latest assembly of organisms we have
* supported by Ensembl == if versionString from trackVersion exists */
if (sameWord(database,"hg19"))
{
hPrintf("
");
printEnsemblAnchor(database, NULL, chromName, winStart, winEnd);
hPrintf("%s | ", "Ensembl");
}
else if (sameWord(database,"hg18"))
{
hPrintf(" ");
printEnsemblAnchor(database, "ncbi36", chromName, winStart, winEnd);
hPrintf("%s | ", "Ensembl");
}
+ else if (sameWord(database,"anoCar2"))
+ {
+ hPrintf(" ");
+ printEnsemblAnchor(database, NULL, chromName, winStart, winEnd);
+ hPrintf("%s | ", "Ensembl");
+ }
else if (ensVersionString[0])
{
char *archive = NULL;
if (ensDateReference[0] && differentWord("current", ensDateReference))
archive = cloneString(ensDateReference);
/* Can we perhaps map from a UCSC random chrom to an Ensembl contig ? */
if (sameWord(database,"oryCun2") || isUnknownChrom(database, chromName))
{
// which table to check
char *ctgPos = "ctgPos";
if (sameWord(database,"oryCun2"))
ctgPos = "ctgPos2";
if (sameWord(database,"fr2"))
fr2ScaffoldEnsemblLink(archive);