66b676451210374b93cbfb156ee3f7d49a8da31e aamp Sun Apr 3 15:30:30 2011 -0700 Removed filtering chainlist bits just to get the CGI at a usable speed diff --git src/hg/hgLiftOver/hgLiftOver.c src/hg/hgLiftOver/hgLiftOver.c index 117e915..733571e 100644 --- src/hg/hgLiftOver/hgLiftOver.c +++ src/hg/hgLiftOver/hgLiftOver.c @@ -464,31 +464,31 @@ return; } /* Get data to convert - from userData variable, or if * that is empty from a file. */ if (cartOptionalString(cart, "SubmitFile")) userData = cartOptionalString(cart, HGLFT_DATAFILE_VAR); else userData = cartOptionalString(cart, HGLFT_USERDATA_VAR); dataFormat = cartCgiUsualString(cart, HGLFT_DATAFORMAT_VAR, DEFAULT_FORMAT); cartWebStart(cart, NULL, "Lift Genome Annotations"); getDbAndGenome(cart, &db, &organism, oldVars); -chainList = liftOverChainListFiltered(); +chainList = liftOverChainList(); choice = defaultChoices(chainList, db); if (choice == NULL) errAbort("Sorry, no conversions available from this assembly\n"); minSizeQ = cartCgiUsualInt(cart, HGLFT_MINSIZEQ, choice->minSizeQ); minChainT = cartCgiUsualInt(cart, HGLFT_MINCHAINT, choice->minChainT); minBlocks = cartCgiUsualDouble(cart, HGLFT_MINBLOCKS, choice->minBlocks); minMatch = cartCgiUsualDouble(cart, HGLFT_MINMATCH, choice->minMatch); fudgeThick = cartCgiUsualBoolean(cart, HGLFT_FUDGETHICK, (choice->fudgeThick[0]=='Y') ? TRUE : FALSE); multiple = cartCgiUsualBoolean(cart, HGLFT_MULTIPLE, (choice->multiple[0]=='Y') ? TRUE : FALSE); refreshOnly = cartCgiUsualInt(cart, HGLFT_REFRESHONLY_VAR, 0); webMain(choice, dataFormat, multiple); liftOverChainFreeList(&chainList);