File Changes for cricket

v251_preview to v251_preview2 (2011-04-26 to 2011-05-03) v251

• src/hg/encode/DAFs/2.0/caltechElements.daf
  • lines changed 3, context: html, text, full: html, text
    Removing the (Wold) and fixing the validation settings
• src/hg/encode/DAFs/2.0/caltechRnaSeq.daf
  • lines changed 3, context: html, text, full: html, text
    Added treatment and better validation settings
  • lines changed 2, context: html, text, full: html, text
    Removing the (Wold) and fixing the validation settings
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 11, context: html, text, full: html, text
    Adding attic as a type of term and marking it as hidden
  • lines changed 12, context: html, text, full: html, text
    Changed the tags for several terms based on feedback from Tim from the code review. Also dropped a term that had been saying should be retired since 12-15-2010
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Changing the expVars to not have localization
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAffyRnaChip.ra
  • lines changed 5122, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 1216, context: html, text, full: html, text
    Issue 2019, cleaning up the trackDb to incorporate changes from release 1 and removing all the V1 bigwigs from the metaDB
  • lines changed 1487, context: html, text, full: html, text
    Renamed Paired to Aligns, renamed fastq V2 to fastq, dropped extra files
  • lines changed 248, context: html, text, full: html, text
    Removing Ilna from file names and metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 217, context: html, text, full: html, text
    Incorporating Julien's changes from the CRG regarding bioRep, labProtocolID, labExpId
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeDukeAffyExon.ra
  • lines changed 211, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 306, context: html, text, full: html, text
    Incorporating Julien's changes from the CRG regarding bioRep, labProtocolID, labExpId
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaSeq.ra
  • lines changed 55, context: html, text, full: html, text
    Incorporating Julien's changes from the CRG regarding bioRep, labProtocolID, labExpId
  • lines changed 37, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 20, context: html, text, full: html, text
    Added final fastq to the mdb
  • lines changed 35, context: html, text, full: html, text
    Putting items into the attic in both the trackDb and the meatDb
  • lines changed 85, context: html, text, full: html, text
    Track 2254 notes 20 and 21, changed fileSortOrder, dropped bad GSMs, moved auxExp from htr8, fixed some long labels
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra
  • lines changed 19, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra
  • lines changed 1, context: html, text, full: html, text
    Added composite as an expVars as per Kate request
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 424, context: html, text, full: html, text
    Incorporating Julien's changes from the CRG regarding bioRep, labProtocolID, labExpId
  • lines changed 24, context: html, text, full: html, text
    Changed Pooled when in fact, it was not pooled, only one rep was available
  • lines changed 1513, context: html, text, full: html, text
    Added clusters and replacements Gm12878 data
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunySwitchgear.ra
  • lines changed 5, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 271, context: html, text, full: html, text
    Adding accession numbers
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 19, context: html, text, full: html, text
    Issue 2019, cleaning up the trackDb to incorporate changes from release 1 and removing all the V1 bigwigs from the metaDB
  • lines changed 64, context: html, text, full: html, text
    Renamed Paired to Aligns, renamed fastq V2 to fastq, dropped extra files
  • lines changed 104, context: html, text, full: html, text
    Removing Ilna from file names and metaData
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Added a new fileSortOrder to be consistent with other transcriptome tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 1, context: html, text, full: html, text
    Changed fileSortOrder to match in all files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 1, context: html, text, full: html, text
    Changed fileSortOrder to match in all files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Changed fileSortOrder to match in all files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 90, context: html, text, full: html, text
    Putting items into the attic in both the trackDb and the meatDb
  • lines changed 53, context: html, text, full: html, text
    Track 2254 notes 20 and 21, changed fileSortOrder, dropped bad GSMs, moved auxExp from htr8, fixed some long labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 1, context: html, text, full: html, text
    Changed fileSortOrder to match in all files
  • lines changed 358, context: html, text, full: html, text
    Added clusters and replacements Gm12878 data
  • lines changed 3, context: html, text, full: html, text
    Added replicated pooled so that make works, did not mean to check this in in the first place
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 2, context: html, text, full: html, text
    Commented out the p-value after discussion with Katrina. Issue 37