Commits for hiram

v251_preview to v251_preview2 (2011-04-26 to 2011-05-03) v251

• completed anoCar2 lastz
  • src/hg/makeDb/doc/galGal3.txt - lines changed 9, context: html, text, full: html, text
• finished lastz runs for anoCar2 on mm9 and xenTro2
  • src/hg/makeDb/doc/anoCar2.txt - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro2.txt - lines changed 20, context: html, text, full: html, text
• adding overrides for ponAbe2 panTro3 chain/net
  • src/hg/makeDb/trackDb/chimp/panTro3/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro3/trackDb.ra - lines changed 2, context: html, text, full: html, text
• need blank line following an include statement
  • src/hg/makeDb/trackDb/chimp/panTro3/trackDb.ra - lines changed 1, context: html, text, full: html, text
• adding chain net overrides
  • src/hg/makeDb/trackDb/lizard/anoCar2/trackDb.chainNet.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar2/trackDb.ra - lines changed 2, context: html, text, full: html, text
• remove debug printf
  • src/hg/utils/phyloTrees/chainNet.pl - lines changed 2, context: html, text, full: html, text
• running lastz galGal3 and ornAna1
  • src/hg/makeDb/doc/anoCar2.txt - lines changed 111, context: html, text, full: html, text
• completed gasAcu1 and ornAna1 lastz
  • src/hg/makeDb/doc/anoCar2.txt - lines changed 37, context: html, text, full: html, text
• lastz to lizard anoCar2 done
  • src/hg/makeDb/doc/gasAcu1.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/ornAna1.txt - lines changed 20, context: html, text, full: html, text
• set priorities and parameters for all lastz alignments to lizard anoCar2
  • src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar2/trackDb.chainNet.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
• fixup sample search terms
  • src/hg/makeDb/trackDb/lizard/anoCar2/description.html - lines changed 13, context: html, text, full: html, text
• adding anoCar2
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
• begin experiment with progress meter
  • src/hg/inc/customTrack.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/customTrack.c - lines changed 3, context: html, text, full: html, text
• beginning to get some measurements, watch out for divide by zero
  • src/hg/inc/customPp.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 68, context: html, text, full: html, text
  • src/hg/lib/customPp.c - lines changed 8, context: html, text, full: html, text
  • src/inc/udc.h - lines changed 5, context: html, text, full: html, text
  • src/lib/udc.c - lines changed 22, context: html, text, full: html, text