File Changes for cline

v252_preview2 to v252_base (2011-05-31 to 2011-06-07) v252

• src/hg/encode/DAFs/2.0/uncBsuProt.daf
  • lines changed 1, context: html, text, full: html, text
    Updated the .daf file for unc/Bsu prot. Set up the scaffolding for a .new.ra file
• src/hg/encode/antibodyWikiParser.py
  • lines changed 1, context: html, text, full: html, text
    Convert the tag to uppercase, for consistency with Tim's new standard
• src/hg/makeDb/doc/hg19.txt
  • lines changed 41, context: html, text, full: html, text
    Updated with the steps for getting the Rfam hg19 alignments from the Rfam group
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 69, context: html, text, full: html, text
    Assorted changes to get the antibodies to (mostly) pass validation (down to only 77 errors - yay)
  • lines changed 422, context: html, text, full: html, text
    Standardized the case of the tag for cell types
  • lines changed 3, context: html, text, full: html, text
    Addressing feedback from this week's code review
  • lines changed 16, context: html, text, full: html, text
    Accepted several provisional stanzas
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 130, context: html, text, full: html, text
    Added three new displayed subtracks and five new download-only subtracks
  • lines changed 19, context: html, text, full: html, text
    Added one more download-only subtrack
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    Updated the .daf file for unc/Bsu prot. Set up the scaffolding for a .new.ra file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRbpSuper.html
  • lines changed 91, context: html, text, full: html, text
    Addressing Redmine issue #460 by removing the SUNY Switchgear track from the RNA supertrack and rewording the supertrack description page (mostly) as specified by Frank from SUNY
  • lines changed 9, context: html, text, full: html, text
    Minor wording changes
  • lines changed 1, context: html, text, full: html, text
    Fixed up a mis-represented track name
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.ra
  • lines changed 1, context: html, text, full: html, text
    Addressing Redmine issue #460 by removing the SUNY Switchgear track from the RNA supertrack and rewording the supertrack description page (mostly) as specified by Frank from SUNY
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.new.ra
  • lines changed 52, context: html, text, full: html, text
    Updated the .daf file for unc/Bsu prot. Set up the scaffolding for a .new.ra file
  • lines changed 31, context: html, text, full: html, text
    Added several new subtracks for uncBsuProt