File Changes for fanhsu

v252_preview2 to v252_base (2011-05-31 to 2011-06-07) v252

• src/hg/hgTracks/simpleTracks.c
  • lines changed 24, context: html, text, full: html, text
    Updated OMIM entry selection logic.
  • lines changed 19, context: html, text, full: html, text
    Added logic for OMIM color for Others category.
  • lines changed 82, context: html, text, full: html, text
    Updated OMIM entry selection/filtering logic functions and color scheme.
  • lines changed 2, context: html, text, full: html, text
    Removed 2 left over lines.
  • lines changed 1, context: html, text, full: html, text
    Use entry color instead of MG_BLACK for bedPlusLabelDrawAt().
• src/hg/hgc/hgc.c
  • lines changed 4, context: html, text, full: html, text
    Added phenotypeClass info after disorder description for omimLocation track.
  • lines changed 6, context: html, text, full: html, text
    Added logic to show phenotype class wqeven phenotypeId is not available.
• src/hg/lib/omimGeneMap.as
  • lines changed 10, context: html, text, full: html, text
    Changed several fields from string to lstring.
• src/hg/makeDb/doc/hg18.txt
  • lines changed 95, context: html, text, full: html, text
    Added section of hg18 new OMIM tracks build.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 5, context: html, text, full: html, text
    Added the missing step of building omimAvSnp table.
• src/hg/makeDb/trackDb/human/hg18/omimAvSnp.html
  • lines changed 55, context: html, text, full: html, text
    Added hg18 omimAvSnp.html.
• src/hg/makeDb/trackDb/human/hg18/omimDescriptionText.html
  • lines changed 21, context: html, text, full: html, text
    Added human/hg18/omimDescriptionText.html.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    Updated default color for OMIM tracks.
• src/hg/oneShot/doOmimLocation/doOmimLocation.c
  • lines changed 10, context: html, text, full: html, text
    Updated so that we can process hg18 data as well.