File Changes for wong

v252_preview2 to v252_base (2011-05-31 to 2011-06-07) v252

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release1.notes
  • lines changed 4015, context: html, text, full: html, text
    added notes files for HAIB TFBS release 1
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    changed the term for the new OHTAM entry, the first 'O' was actually a zero.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 465, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    changed haibtfbs to have a .new for alpha
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
  • lines changed 19, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 6, context: html, text, full: html, text
    made some corrections to sydh tfbs, I had used the old term in mdb with the zero, and I changed the name on the tag in track db for tfbs, changed TAM to OHTAM in RRbs
  • lines changed 177, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 381, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 381, context: html, text, full: html, text
    added metadata for subID 4064 and added metadata and trackdb data for 4160
  • lines changed 114, context: html, text, full: html, text
    loaded submission id# 4163, the entire sl102 experiment, and some missing fiels from sl13 and sl144
  • lines changed 705, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
  • lines changed 93, context: html, text, full: html, text
    changed long label, added in missing expId's and dcc accession's
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 12, context: html, text, full: html, text
    changed the TAM treatments to OHTAM treatments, there was some misunderstanding with regards to what treatment was used where, fixed now
  • lines changed 12, context: html, text, full: html, text
    made some corrections to sydh tfbs, I had used the old term in mdb with the zero, and I changed the name on the tag in track db for tfbs, changed TAM to OHTAM in RRbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 4, context: html, text, full: html, text
    made some corrections to sydh tfbs, I had used the old term in mdb with the zero, and I changed the name on the tag in track db for tfbs, changed TAM to OHTAM in RRbs
  • lines changed 4, context: html, text, full: html, text
    changed the sort order for treatments so that OHTAM came before None.
  • lines changed 4, context: html, text, full: html, text
    chamges OHTAM's tag and None to zNone
  • lines changed 11, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
  • lines changed 193, context: html, text, full: html, text
    changed none to znone in the actual tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 31, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html
  • lines changed 4, context: html, text, full: html, text
    fixed broken link in description of haib tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 26, context: html, text, full: html, text
    added metadata for subID 4064 and added metadata and trackdb data for 4160
  • lines changed 24, context: html, text, full: html, text
    loaded submission id# 4163, the entire sl102 experiment, and some missing fiels from sl13 and sl144
  • lines changed 31, context: html, text, full: html, text
    changed HTB-11 to SK-N-SH cell line
  • lines changed 95, context: html, text, full: html, text
    changed SKNSH to SK_N_SH in long labels, changed other short and long labels to fit norm, default windowing for raw signal is mean+whiskers now
  • lines changed 4, context: html, text, full: html, text
    changed Pol24 to POL24 in short labels that were inconsistent
  • lines changed 1, context: html, text, full: html, text
    moved geo accession to be after ucsc accession
  • lines changed 1, context: html, text, full: html, text
    added set type and contorl id to file sort order.
  • lines changed 46, context: html, text, full: html, text
    changed default options for what is on, as requested by flo.
  • lines changed 1, context: html, text, full: html, text
    changed long label, added in missing expId's and dcc accession's
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 5, context: html, text, full: html, text
    changed the TAM treatments to OHTAM treatments, there was some misunderstanding with regards to what treatment was used where, fixed now
  • lines changed 1, context: html, text, full: html, text
    made some corrections to sydh tfbs, I had used the old term in mdb with the zero, and I changed the name on the tag in track db for tfbs, changed TAM to OHTAM in RRbs