File Changes for angie

v251_base to v252_preview (2011-05-10 to 2011-05-17) v252

• src/hg/hgTracks/hgTracks.h
  • lines changed 1, context: html, text, full: html, text
    Feature #3476 (zap-to-edge arrows for OMIM tracks):Reduced spacing around next-item and next-exon/edge arrows so that next-exon/edge arrows wouldn't appear separately from exons or items that barely appear at the edge of the viewing window.
• src/hg/hgTracks/vcfTrack.c
  • lines changed 8, context: html, text, full: html, text
    Feature #3711 bugfix: handle 0 or 1 items correctly in hacTree andVCF track handler's haplotype clustering.
  • lines changed 93, context: html, text, full: html, text
    Feature #2823 (VCF track handler): request from alpha-test user CarlosBorroto: call Belinda's coding variant functional prediction function as on the pgSnp details page.
  • lines changed 75, context: html, text, full: html, text
    Feature #3711 (VCF center-weighted haplotype clustering): David request:make the variant used as the center really stand out visually.
• src/hg/hgc/vcfClick.c
  • lines changed 15, context: html, text, full: html, text
    Feature #2823 (VCF track handler): request from alpha-test user CarlosBorroto: call Belinda's coding variant functional prediction function as on the pgSnp details page.
• src/hg/inc/pgSnp.h
  • lines changed 10, context: html, text, full: html, text
    Feature #2823 (VCF track handler): request from alpha-test user CarlosBorroto: call Belinda's coding variant functional prediction function as on the pgSnp details page.
• src/hg/lib/hui.c
  • lines changed 69, context: html, text, full: html, text
    Removing some old #ifndef code that has been unused for 6 months.
• src/hg/lib/pgSnp.c
  • lines changed 98, context: html, text, full: html, text
    Feature #2823 (VCF track handler): request from alpha-test user CarlosBorroto: call Belinda's coding variant functional prediction function as on the pgSnp details page.
• src/hg/txGraph/txBedToGraph/makeGraph.c
  • lines changed 2, context: html, text, full: html, text
    Changing lowercase "true" and "false" to uppercase, because that isdefined in common.h. Using lowercase does not cause a compilation error on our CentOs dev systems, but it does on Ubuntu.
• src/lib/hacTree.c
  • lines changed 11, context: html, text, full: html, text
    Feature #3711 bugfix: handle 0 or 1 items correctly in hacTree andVCF track handler's haplotype clustering.