be3c30eebd8be34d5bf3c382527540fdb280eac9 kuhn Fri May 13 14:18:10 2011 -0700 moved table of SNP info off left margin diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 379727a..3a740d7 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -100,57 +100,59 @@
  • Flagged SNPs (132): uniquely mapped variants, excluding Common SNPs, that have been flagged by dbSNP as "clinically associated"
  • Mult. SNPs (132): variants that have been mapped to more than one genomic location
  • By default, only the Common SNPs (132) are visible; other tracks must be made visible using the track controls.

    The counts of distinct reference SNPs and their mappings to hg19 differ greatly among the tracks:

    +
    Track Reference SNPs Mappings to hg19
    Common SNPs (132) 13,842,381 14,024,295 *
    Flagged SNPs (132) 17,899 18,084 *
    Mult. SNPs (132) 1,114,599 3,568,988
    All SNPs (132) 30,030,754 33,026,121
    +

    * The Common and Flagged tracks have more mappings than SNPs due to the alternate haplotype sequences and the pseudoautosomal regions on X and Y. SNPs are considered uniquely mapped if they map only once to a haploid reference genome. These regions add non-haploid sequence to the reference genome; therefore, multiple mappings involving these regions are still considered unique.

    You will find the four SNPs (132) tracks on the Human Feb. 2009 (GRCh37/hg19) browser in the "Variation and Repeats" group.

    Many thanks to dbSNP at NCBI for the data, and to