be3c30eebd8be34d5bf3c382527540fdb280eac9 kuhn Fri May 13 14:18:10 2011 -0700 moved table of SNP info off left margin diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 379727a..3a740d7 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -100,57 +100,59 @@ <li>Flagged SNPs (132): uniquely mapped variants, excluding Common SNPs, that have been flagged by dbSNP as "clinically associated"</li> <li>Mult. SNPs (132): variants that have been mapped to more than one genomic location</li> </ul> <P> By default, only the Common SNPs (132) are visible; other tracks must be made visible using the track controls. </P> <P> The counts of distinct reference SNPs and their mappings to hg19 differ greatly among the tracks: </P> + <BLOCKQUOTE> <table border="1" cellpadding="3"> <tr> <th>Track</th> <th>Reference SNPs</th> <th>Mappings to hg19</th> </tr> <tr> <td>Common SNPs (132)</td> <td>13,842,381</td> <td>14,024,295 *</td> </tr> <tr> <td>Flagged SNPs (132)</td> <td>17,899</td> <td>18,084 *</td> </tr> <tr> <td>Mult. SNPs (132)</td> <td>1,114,599</td> <td>3,568,988</td> </tr> <tr> <td>All SNPs (132)</td> <td>30,030,754</td> <td>33,026,121</td> </tr> </table> + </BLOCKQUOTE> <P> * The Common and Flagged tracks have more mappings than SNPs due to the alternate haplotype sequences and the pseudoautosomal regions on X and Y. SNPs are considered uniquely mapped if they map only once to a haploid reference genome. These regions add non-haploid sequence to the reference genome; therefore, multiple mappings involving these regions are still considered unique. </P> <P> You will find the four SNPs (132) tracks on the Human Feb. 2009 (GRCh37/hg19) browser in the "Variation and Repeats" group. </P> <P> Many thanks to dbSNP at NCBI for the data, and to