File Changes for vsmalladi

v251_base to v252_preview (2011-05-10 to 2011-05-17) v252

• src/hg/encode/DAFs/2.0/licrMm9RnaSeq.daf
  • lines changed 59, context: html, text, full: html, text
    First Version of the RNA-seq DAF for Ren Lab.
  • lines changed 5, context: html, text, full: html, text
    Added localization as a variable. Also updated validation settings to validate first 28 basepairs.
  • lines changed 2, context: html, text, full: html, text
    Fixed lab that was typed wrong when compared to cv.ra
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Added term id that was missing for TReg cell line. Should mathc same termId (ontology) as TNaive.
  • lines changed 22, context: html, text, full: html, text
    Added cell line B-cell_(CD43-) and strain Spretus.BL6-Xist so that UW Mouse DNase data can be loaded.
  • lines changed 2, context: html, text, full: html, text
    Updated age of the B-cells harvested to adult-8wks since they were harvested from adult mice and are not a cell line.
  • lines changed 2, context: html, text, full: html, text
    Fixed statza for H3K9me3_(9754) to have a term filed instead of erm field.
  • lines changed 2, context: html, text, full: html, text
    Update tags for auxValid and auxExp to be lower case to follow convention of either tags all in Upper or Lower case. Extended tags to be auxval and auxexp to match tag for auxSup of auxsup.
  • lines changed 1, context: html, text, full: html, text
    Removed extra line space left in cv.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html
  • lines changed 19, context: html, text, full: html, text
    Made the Description clearer about what certain histone modificiation represent phenotypically. Redmine #68 issue # 24.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile
  • lines changed 2, context: html, text, full: html, text
    Added 10 experiments for the Ren lab RNA-Seq track.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 18, context: html, text, full: html, text
    Added tissueSourceType information for MEF cells, that were forgotten.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
  • lines changed 1541, context: html, text, full: html, text
    Added 10 experiments for the Ren lab RNA-Seq track.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 24, context: html, text, full: html, text
    Added tissueSourceType information for MEF cells, that were forgotten.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 1405, context: html, text, full: html, text
    Added 14 submissions to track.
  • lines changed 69, context: html, text, full: html, text
    Updated the naming of files Rep 1 of 3134 experiment to have correct strain: RIII and age:Immortal in the file name.
  • lines changed 58, context: html, text, full: html, text
    Changed Raw Signal -> Signal to better describe data as presented. Redmine #191.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 4, context: html, text, full: html, text
    Added 10 experiments for the Ren lab RNA-Seq track.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.html
  • lines changed 14, context: html, text, full: html, text
    Updated track description pages of tracks to reflect edits desired by the lab.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.html
  • lines changed 107, context: html, text, full: html, text
    Added track Description for the LICR RNA-Seq track.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.ra
  • lines changed 413, context: html, text, full: html, text
    Added 10 experiments for the Ren lab RNA-Seq track.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.html
  • lines changed 14, context: html, text, full: html, text
    Updated track description pages of tracks to reflect edits desired by the lab.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.html
  • lines changed 2, context: html, text, full: html, text
    Changed Raw Signal -> Signal to better describe data as presented. Redmine #191.
  • lines changed 8, context: html, text, full: html, text
    Added Another Refernece journal, Redmine #191.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra
  • lines changed 356, context: html, text, full: html, text
    Added 14 submissions to track.
  • lines changed 3, context: html, text, full: html, text
    Updated the naming of files Rep 1 of 3134 experiment to have correct strain: RIII and age:Immortal in the file name.
  • lines changed 119, context: html, text, full: html, text
    Changed Raw Signal -> Signal to better describe data as presented. Redmine #191.
  • lines changed 165, context: html, text, full: html, text
    Updated coloring schema. This is the first pass.
  • lines changed 1, context: html, text, full: html, text
    Recommented out line that was undone to use renamer.