9b6958624673a00fdbe8447b7167e08301fd84bb
baertsch
  Fri May 20 13:31:58 2011 -0700
retro track changes to add ucscRetroOrtho table and hgc, hgTrackUI changes.
diff --git src/hg/hgTrackUi/hgTrackUi.c src/hg/hgTrackUi/hgTrackUi.c
index bc70b0e..19f9c1a 100644
--- src/hg/hgTrackUi/hgTrackUi.c
+++ src/hg/hgTrackUi/hgTrackUi.c
@@ -1579,31 +1579,34 @@
 {
 printf("<B>Label:</B> ");
 labelMakeCheckBox(tdb, "orgCommon", "common name", FALSE);
 labelMakeCheckBox(tdb, "orgAbbrv", "organism abbreviation", FALSE);
 labelMakeCheckBox(tdb, "db", "assembly database", FALSE);
 labelMakeCheckBox(tdb, "gene", "gene", FALSE);
 labelMakeCheckBox(tdb, "acc", "accession", FALSE);
 
 baseColorDrawOptDropDown(cart, tdb);
 indelShowOptions(cart, tdb);
 }
 
 void retroGeneUI(struct trackDb *tdb)
 /* Put up retroGene-specific controls */
 {
-geneIdConfig(tdb);
+printf("<B>Label:</B> ");
+labelMakeCheckBox(tdb, "gene", "gene", FALSE);
+labelMakeCheckBox(tdb, "acc", "accession", FALSE);
+
 baseColorDrawOptDropDown(cart, tdb);
 }
 
 void vegaGeneUI(struct trackDb *tdb)
 /* Put up Vega Gene track-specific controls */
 {
 geneIdConfig(tdb);
 printf("<BR>\n");
 
 /* Put up codon coloring stuff. */
 baseColorDrawOptDropDown(cart, tdb);
 }
 
 void ensemblNonCodingTypeConfig(struct trackDb *tdb)
 {
@@ -2407,31 +2410,31 @@
         transMapUI(tdb);
 else if (sameString(track, "refGene"))
         refGeneUI(tdb);
 else if (sameString(track, "rgdGene2"))
         rgdGene2UI(tdb);
 else if (sameString(track, "knownGene"))
         knownGeneUI(tdb);
 else if (sameString(track, "omimLocation"))
         omimLocationUI(tdb);
 else if (sameString(track, "omimGene2"))
         omimGene2UI(tdb);
 else if (sameString(track, "omimGene"))
         omimGeneUI(tdb);
 else if (sameString(track, "hg17Kg"))
         hg17KgUI(tdb);
-else if (sameString(track, "pseudoGeneLink") || startsWith("retroMrnaInfo", track))
+else if (startsWith("ucscRetro", track) || startsWith("retroMrnaInfo", track))
         retroGeneUI(tdb);
 else if (sameString(track, "ensGeneNonCoding"))
         ensemblNonCodingUI(tdb);
 else if (sameString(track, "vegaGeneComposite"))
         vegaGeneUI(tdb);
 else if (sameString(track, "all_mrna"))
     mrnaUi(tdb, FALSE);
 else if (sameString(track, "mrna"))
     mrnaUi(tdb, FALSE);
 else if (sameString(track, "splicesP"))
     bedUi(tdb, cart, "", FALSE);
 else if(sameString(track,"FantomCageBedForward") || sameString(track,"FantomCageBedReverse") ||
 	sameString(track,"FantomCageReadForward") || sameString(track,"FantomCageReadReverse"))
     bedUi(tdb, cart, "", FALSE);
 else if (sameString(track, "all_est"))