bbb49b68cc20f2dbfd6dcedf04b8bf17997435cb
fanhsu
  Thu May 26 11:50:31 2011 -0700
Updated class descriptions for OMIM tracks.
diff --git src/hg/hgTrackUi/hgTrackUi.c src/hg/hgTrackUi/hgTrackUi.c
index ad017fe..c12c1db 100644
--- src/hg/hgTrackUi/hgTrackUi.c
+++ src/hg/hgTrackUi/hgTrackUi.c
@@ -1421,61 +1421,61 @@
 {
 hg17KgIdConfig(tdb);
 baseColorDrawOptDropDown(cart, tdb);
 }
 
 void omimLocationConfig(struct trackDb *tdb)
 /* Put up OMIM Location track controls */
 {
 char varName[64];
 char *geneLabel;
 safef(varName, sizeof(varName), "%s.label", tdb->track);
 geneLabel = cartUsualString(cart, varName, "OMIM ID");
 printf("<BR><B>Include Entries of:</B> ");
 printf("<UL>\n");
 printf("<LI>");
-labelMakeCheckBox(tdb, "class1", "class 1: disorder positioned by mapping of the wildtype gene", TRUE);
+labelMakeCheckBox(tdb, "class1", "class 1: the disorder is placed on the map based on its association with a gene, but the underlying defect is not known.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class2", "class 2: disease phenotype mapped", TRUE);
+labelMakeCheckBox(tdb, "class2", "class 2: the disorder has been placed on the map by linkage; no mutation has been found.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class3", "class 3: molecular basis of the disorder is known", TRUE);
+labelMakeCheckBox(tdb, "class3", "class 3: the molecular basis for the disorder is known; a mutation has been found in the gene.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class4", "class 4: chromosome deletion or duplication syndrome", TRUE);
+labelMakeCheckBox(tdb, "class4", "class 4: a contiguous gene deletion or duplication syndrome, multiple genes are deleted or duplicated causing the phenotype.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "others", "others", TRUE);
+labelMakeCheckBox(tdb, "others", "Others: no associated OMIM phenotype class info available.", TRUE);
 printf("</UL>");
 }
 
 void omimGene2Config(struct trackDb *tdb)
 /* Put up OMIM Genes track controls */
 {
 char varName[64];
 char *geneLabel;
 safef(varName, sizeof(varName), "%s.label", tdb->track);
 geneLabel = cartUsualString(cart, varName, "OMIM ID");
 printf("<BR><B>Include Entries of:</B> ");
 printf("<UL>\n");
 printf("<LI>");
-labelMakeCheckBox(tdb, "class1", "class 1: disorder positioned by mapping of the wildtype gene", TRUE);
+labelMakeCheckBox(tdb, "class1", "class 1: the disorder is placed on the map based on its association with a gene, but the underlying defect is not known.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class2", "class 2: disease phenotype mapped", TRUE);
+labelMakeCheckBox(tdb, "class2", "class 2: the disorder has been placed on the map by linkage; no mutation has been found.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class3", "class 3: molecular basis of the disorder is known", TRUE);
+labelMakeCheckBox(tdb, "class3", "class 3: the molecular basis for the disorder is known; a mutation has been found in the gene.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "class4", "class 4: chromosome deletion or duplication syndrome", TRUE);
+labelMakeCheckBox(tdb, "class4", "class 4: a contiguous gene deletion or duplication syndrome, multiple genes are deleted or duplicated causing the phenotype.", TRUE);
 printf("<LI>");
-labelMakeCheckBox(tdb, "others", "others", TRUE);
+labelMakeCheckBox(tdb, "others", "Others: no associated OMIM phenotype class info available.", TRUE);
 printf("</UL>");
 }
 
 void omimGeneIdConfig(struct trackDb *tdb)
 /* Put up gene ID track controls */
 {
 char varName[64];
 char *geneLabel;
 safef(varName, sizeof(varName), "%s.label", tdb->track);
 geneLabel = cartUsualString(cart, varName, "OMIM ID");
 printf("<BR><B>Label:</B> ");
 radioButton(varName, geneLabel, "OMIM ID");
 radioButton(varName, geneLabel, "OMIM gene or syndrome");
 radioButton(varName, geneLabel, "UCSC gene symbol");
 }