88c3b3d8ed217d673a1879972d488f2303ea72f3 hiram Wed Jun 22 15:53:12 2011 -0700 properly recognize custom tracks, and allow close of bigWig files after load time diff --git src/hg/hgTracks/bedGraph.c src/hg/hgTracks/bedGraph.c index 82e04b7..5fc7d51 100644 --- src/hg/hgTracks/bedGraph.c +++ src/hg/hgTracks/bedGraph.c @@ -23,59 +23,59 @@ * All these names were condensed into the root of the name with * the extensions removed. */ static char *bedGraphName(struct track *tg, void *item) /* Return name of bedGraph level track. */ { struct bedGraphItem *bg = item; return bg->name; } void ctBedGraphLoadItems(struct track *tg) { /* load custom bedGraph track data */ /* Verify this is a custom track */ -if (tg->customPt == (void *)NULL) +if (! (isCustomTrack(tg->table) && tg->customPt)) errAbort("ctBedGraphLoadItems: did not find a custom wiggle track: %s", tg->track); errAbort("custom track bedGraph load items not yet implemented"); } /* bedGraphLoadItems - an ordinary bed load, but we are interested * in only the chrom, start, end, and the graphColumn */ static void bedGraphLoadItems(struct track *tg) { struct sqlConnection *conn; struct sqlResult *sr = (struct sqlResult *) NULL; char **row = (char **)NULL; int rowOffset = 0; struct bedGraphItem *bgList = NULL; int itemsLoaded = 0; int colCount = 0; struct wigCartOptions *wigCart = (struct wigCartOptions *) tg->extraUiData; int graphColumn = 5; char *tableName; if(sameString(tg->table, "affyTranscription")) wigCart->colorTrack = "affyTransfrags"; graphColumn = wigCart->graphColumn; #ifndef GBROWSE -if (tg->customPt) +if (isCustomTrack(tg->table) && tg->customPt) { struct customTrack *ct = (struct customTrack *) tg->customPt; tableName = ct->dbTableName; conn = hAllocConn(CUSTOM_TRASH); } else #endif /* GBROWSE */ { tableName = tg->table; conn = hAllocConnTrack(database, tg->tdb); } sr = hRangeQuery(conn, tableName, chromName, winStart, winEnd, NULL, &rowOffset);