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16 June 2011 -
Re-engineered OMIM Tracks Released
We announce today the release of our newly re-engineered OMIM
(Online Mendelian Inheritance in Man) tracks for both hg18 and
hg19. With the kind assistance of Ada Hamosh (director),
Joanna Amberger and Francois Schiettecatte of the OMIM project,
we have divided the OMIM records into three separate tracks:
OMIM Allelic Variant SNPs
Variants in the OMIM database that have associated dbSNP identifiers.
OMIM Genes
The genomic positions of gene entries in the OMIM database.
The coloring indicates the associated OMIM phenotype class.
OMIM Phenotypes - Gene Unknown
Regions known to be associated with a phenotype, but for which no
specific gene is known to be causative. This track also includes
known multi-gene syndromes.
- The OMIM tracks are searchable by OMIM number. In most cases,
+ The new tracks can be found in the Phenotype and Disease Associations
+ track group below the browser graphic
+ and are searchable by OMIM number. In most cases,
simply typing the 6-digit MIM number into the position/search box
on the Browser will take you to the record.
The OMIM data are the property of Johns Hopkins University and
will not be available for download from UCSC. Please contact the
OMIM project at omim.org for download information.
UCSC thanks engineers Fan Hsu, Brooke Rhead and Robert Kuhn for
this release.
9 June 2011 -
UCSC Preview Browser Available
Early access to ENCODE and other UCSC browser data tracks under
construction is now available from the new UCSC Preview Browser site:
http://genome-preview.ucsc.edu
This site is a weekly mirror of our internal development server for
public access. Data and tools there are under construction, have not
been quality reviewed, and are subject to change at any time. We provide
this site for early access, with the warning that it is less available
and stable than our public site. For high-quality reviewed annotations
on our production server, visit our public website:
http://genome.ucsc.edu.
7 June 2011 -
Updated Lizard Browser Available:
We have released a Genome Browser for the May 2010
genome assembly of the green anole lizard, Anolis
carolinensis (Broad
version AnoCar2.0, UCSC version anoCar2).
Read more.
26 May 2011 - New
Release of UCSC Genes for Mouse:
We've released an updated set of UCSC Genes for the mm9
(NCBI Build 37) mouse Genome Browser.
Read more.
1 May 2011 - ENCODE
User's Guide:
The ENCODE project has just published an overview of their ongoing large-scale
efforts to interpret the human genome sequence in the journal PLoS Biology.
A Users Guide to the Encyclopedia of DNA Elements,
highlights the scope of data production, and provides guidance for locating
and using the data.
Read more.
18 April 2011 -
dbSNP 132 Available for hg19:
We are pleased to announce the release of four tracks derived from
dbSNP
build 132, available on the human assembly (GRCh37/hg19).
dbSNP build 132 is available at NCBI.
Read more.
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