a9ac821e24b49407dfd64b03fb6e00338732f0ac aamp Wed Jun 8 00:53:49 2011 -0700 bugfix for microarray tracks with no default grouping e.g. rinnSex (mm7/mm8) diff --git src/hg/hgTracks/expRatioTracks.c src/hg/hgTracks/expRatioTracks.c index 798420a..24e0b8d 100644 --- src/hg/hgTracks/expRatioTracks.c +++ src/hg/hgTracks/expRatioTracks.c @@ -516,30 +516,32 @@ slSort(&tg->items,lfsSortByName); } bedFreeList(&bedList); } static void lfsFromBedAndGrouping(struct track *tg, struct maGrouping *combineGroup, struct maGrouping *subset, int subsetOffset) /* This is sort of a replacement of msBedGroupByIndex. */ /* It's meant to be the default microarray track filter */ /* for tracks using the new microarrayGroups.ra scheme. */ { struct linkedFeaturesSeries *lfsList = NULL; struct bed *bedList = tg->items; int i; int numRows; char newLongLabel[512]; +if (!combineGroup) + errAbort("Error: somehow there is no grouping select for the %s track", tg->track); if (bedList && (bedList->expCount != combineGroup->size)) errAbort("Error: %s grouping has bad size (%d). Expected %d", combineGroup->name, combineGroup->size, bedList->expCount); maBedClumpGivenGrouping(bedList, combineGroup, subset, subsetOffset); numRows = combineGroup->numGroups; /* Initialize the lfs array first. */ for (i = 0; i < numRows; i++) { struct linkedFeaturesSeries *lfs; struct bed *bed; char customName[16]; safef(customName, sizeof(customName), "Array %d", i+1); AllocVar(lfs); if (combineGroup == NULL) lfs->name = cloneString(customName); else