File Changes for cricket

v252_base to v253_preview (2011-06-07 to 2011-06-14) v253

• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 13, context: html, text, full: html, text
    Getting the pipeline to accept spikeIns and to accept doc which is Tim's design
• src/hg/encode/encodeValidate/config/labs.ra
  • lines changed 3, context: html, text, full: html, text
    Changeing wranglers around
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    Corrected the spelling of auxiliary
  • lines changed 2, context: html, text, full: html, text
    Getting the pipeline to accept spikeIns and to accept doc which is Tim's design
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 6, context: html, text, full: html, text
    adding new view ExonGencV3c
  • lines changed 11, context: html, text, full: html, text
    Added spikeInLib and corrected run validation
  • lines changed 4, context: html, text, full: html, text
    Trying to get spikeInPool to work
  • lines changed 25, context: html, text, full: html, text
    Trying out new tags for DMSO, they are commented out
  • lines changed 6, context: html, text, full: html, text
    Removing the duplicate of ExonGencV3c
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    Depricating LHSR
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.new.ra
  • lines changed 30, context: html, text, full: html, text
    Depricating LHSR
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.new.html
  • lines changed 74, context: html, text, full: html, text
    Depricating LHSR
  • lines changed 1, context: html, text, full: html, text
    Small description clarification for release notes
  • lines changed 5, context: html, text, full: html, text
    Removed link
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 735, context: html, text, full: html, text
    cleaned out suspect data references and the metaData (pooled, 1,2) that was failing validate, added a link to the supplimental directory
  • lines changed 24, context: html, text, full: html, text
    bringing in lost metaData
  • lines changed 2797, context: html, text, full: html, text
    Added protocols
  • lines changed 473, context: html, text, full: html, text
    Added tier 2 labels and filtering, added origAssembly and dccRep where missing, fixed retinoic acid label
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 22, context: html, text, full: html, text
    bringing in lost metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 113, context: html, text, full: html, text
    Cleaning up metaData to match validate. Solexa is dropped and TranscriptGencV3c is fixed where required
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 13, context: html, text, full: html, text
    Cleaning up metaData to match validate. Solexa is dropped and TranscriptGencV3c is fixed where required
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 752, context: html, text, full: html, text
    Final details from the inventory, removed 1 duplicate experiment, changed the metadata for labExpId J84
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.html
  • lines changed 14, context: html, text, full: html, text
    added release notes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    cleaned out suspect data references and the metaData (pooled, 1,2) that was failing validate, added a link to the supplimental directory
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 90, context: html, text, full: html, text
    cleaned out suspect data references and the metaData (pooled, 1,2) that was failing validate, added a link to the supplimental directory
  • lines changed 8, context: html, text, full: html, text
    added back missing Contig
  • lines changed 297, context: html, text, full: html, text
    Added tier 2 labels and filtering, added origAssembly and dccRep where missing, fixed retinoic acid label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html
  • lines changed 1, context: html, text, full: html, text
    Fixed a broken link
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 21, context: html, text, full: html, text
    Changed release notes according to #2254
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 9, context: html, text, full: html, text
    Final details from the inventory, removed 1 duplicate experiment, changed the metadata for labExpId J84
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
  • lines changed 1, context: html, text, full: html, text
    Fixing broken link